Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02697 GCACGGGGGCAAACCAATATCCCATTCACCTATTTGGCCGTGAACATCACTCGCGCATGCCGCAATCTCCCCCCATTACACGGCGGAGCGTGAATCTTAAACCCTATGAGGAGGCGCGTGGCATTCATCTCCCAACAAATCTCTATTTAAATGAAAAAAACGAGATATTCTGCTCAGGGTCGTTTCGGGGCTTTCTTCAGCACTCAGTTACTCTCTCTTTTCCAGAGCGTCGTCGTTTTGTCGGGCACAAAACCCCTTTTCGGATCCGTGAAGCAAAGCCTCGCCGGCGAGATTCCGGAGCCTGTTCAATCGGCGATCGAGCACCGGCGAAAGTGACAAAGATGAAGGTTTTCGTGAAAACTCTCAAGGGAACGCACTTCGAAATTGAAGTGAATCCCTCAGACACGCTGTCTGAAGTGAAGAAAAATATAGAAACAGTTCAAGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAGGATGGTACTACTTTGGAGGAAAATAAAGTAGCTGAAAACAGTTTTATTGTAATTATGCTATCAAAGACTAAGAGCGCATCTGGTGAAGGATCTGCTGCTTCTACTGCACCTTCAGCTAAGACAAGTGCTACTCCTACTTCAACCTCTGTGCCTGCTGCTCCTCAAGCTCCTGCTTCAACTGGAGCAACGCCTACACCTGTTACTGCCCCAGCAGCAGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCATCAACTCCTACTCCTGCATCAGCTCCTACTCCTGTTTCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTGCCAGGGTCTGATATATATGGGCAGGCAGCATCCAATCTTGTTGCTGGAACCAACTTGGAGGAAACAATTCAGCAAATCCTTGACATGGGTGGAGGAAGCTGGGACAGGGATACTGTTGTTTGTGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCTGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACTCGAGTGCCTGCAAGTGCTCAACCTGCAAATCCTACAGCTGCTGCTCCCCAGGCAGCTCAACCACCATCTGTTCCTTCCAGTGGACCCAATGCTAATCCTTTAGACCTCTTTCCCCAGGGCCTTCCCAATGTTGGTTCTGGTGCTGCTGGTGCAGGCTCTCTAGACTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTACGTGCTATGGTACAGGCTAATCCACAAATATTACAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCAAGAGCATCAAGCCGACTTCCTTCGCCTAATTAACGAACCTGTTGAAGGGGGTGAAGGAAATATACTGGGACAGCTGGCCGGTGCCATGCCGCAAGCAGTTACTGTCACCCCTGAAGAGCGGCAAGCAATTGAACGTCTCGAAGCGATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAAGAACTTGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAGTAATTAGATTTCCTTTAAAATTTGCCAACATATTTTTAATGTTTTCTTTTGAACAATCTTATTATATGTAACGAGGTAATATTTGATAATGACAATTTCGAATGGACAAGGAATATTTTAATCACCTCATTATTGTCCATCTATCCATTTTCTTAGAAATTTTATACATAGCTGTTTGGCTTGTATTGTTTATGGTGCATTCTCTTGCAGCAGATACTGATATTTAGA 1808 0.4591 MPQSPPITRRSVNLKPYEEARGIHLPTNLYLNEKNEIFCSGSFRGFLQHSVTLSFPERRRFVGHKTPFRIREAKPRRRDSGACSIGDRAPAKVTKMKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKTKSASGEGSAASTAPSAKTSATPTSTSVPAAPQAPASTGATPTPVTAPAAAPAPAPAPAPAPASTPTPASAPTPVSAPAPISSGSAVPGSDIYGQAASNLVAGTNLEETIQQILDMGGGSWDRDTVVCALRAAYNNPERAVEYLYSGIPEQAEAPPVTRVPASAQPANPTAAAPQAAQPPSVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02697 508 SUPERFAMILY UBA-like 445 507 IPR009060 GO:0005515
Pste1g02697 508 FunFam UV excision repair protein RAD23 B 374 439 - -
Pste1g02697 508 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 275 318 IPR015940 -
Pste1g02697 508 Pfam UBA/TS-N domain 277 315 IPR015940 -
Pste1g02697 508 Pfam UBA/TS-N domain 464 499 IPR015940 -
Pste1g02697 508 PRINTS DNA repair protein Rad23 signature 409 431 IPR004806 GO:0006289
Pste1g02697 508 PRINTS DNA repair protein Rad23 signature 490 505 IPR004806 GO:0006289
Pste1g02697 508 PRINTS DNA repair protein Rad23 signature 458 474 IPR004806 GO:0006289
Pste1g02697 508 PRINTS DNA repair protein Rad23 signature 475 489 IPR004806 GO:0006289
Pste1g02697 508 SMART CBM 381 424 IPR006636 -
Pste1g02697 508 Gene3D - 374 439 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pste1g02697 508 Pfam Ubiquitin family 98 171 IPR000626 GO:0005515
Pste1g02697 508 FunFam UV excision repair protein RAD23 96 175 - -
Pste1g02697 508 Gene3D - 270 320 - -
Pste1g02697 508 MobiDBLite consensus disorder prediction 175 215 - -
Pste1g02697 508 MobiDBLite consensus disorder prediction 327 364 - -
Pste1g02697 508 CDD UBA1_Rad23_plant 271 320 - -
Pste1g02697 508 Gene3D - 92 175 - -
Pste1g02697 508 SMART uba_6 464 501 IPR015940 -
Pste1g02697 508 SMART uba_6 277 317 IPR015940 -
Pste1g02697 508 NCBIfam UV excision repair protein Rad23 96 507 IPR004806 GO:0006289
Pste1g02697 508 SUPERFAMILY XPC-binding domain 380 445 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pste1g02697 508 SUPERFAMILY Ubiquitin-like 96 174 IPR029071 -
Pste1g02697 508 FunFam UV excision repair protein RAD23 homolog 270 320 - -
Pste1g02697 508 SMART ubq_7 96 170 IPR000626 GO:0005515
Pste1g02697 508 Gene3D - 456 503 - -
Pste1g02697 508 CDD Ubl_Rad23 96 169 - -
Pste1g02697 508 FunFam UV excision repair protein RAD23 homolog 455 503 - -
Pste1g02697 508 Pfam XPC-binding domain 383 438 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pste1g02697 508 PANTHER UV EXCISION REPAIR PROTEIN RAD23 96 497 - -
Pste1g02697 508 ProSiteProfiles Ubiquitin domain profile. 96 174 IPR000626 GO:0005515
Pste1g02697 508 MobiDBLite consensus disorder prediction 175 253 - -
Pste1g02697 508 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 461 502 IPR015940 -
Pste1g02697 508 MobiDBLite consensus disorder prediction 334 350 - -
Pste1g02697 508 MobiDBLite consensus disorder prediction 218 246 - -
Pste1g02697 508 SUPERFAMILY UBA-like 275 329 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02697 Pste-Chr1 10771772 10779990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02697 96 169 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 2.25e-09 53.9