Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02688 ATGAGTATAAAAAGGAGGTTACTGGAAGTGGTATTGTTAACAAAGGTGAATAGAGTGAAGGGGATGACAAGATCGAAGGGTGATGTGGGTCGTAGAGCTATAAACAGAAAAGCAAGAGCAAAGAAGGATCGACACACGAAGGTGAATGGGAGAGAGAGACGTGTACTGTTGCCACCTTTAAGCGCTGCACGCATATTTCAACTGACTCGTGAGTTAGGTCATAAGACACATGGGGAGACCATAGGGTGGCTTCTACGACAGGCTGAACCTTCCATTATCGCCGCCACTGGCACTGGGCTATCACCTTCCATCGATCAGTTTGCACCATCTCCATCATCTCAATCTCAATCTCATCATAAAAACATTGTTGCTGCTTCAACGGACAATCAGTCTCTACCATTGGATTTTGACTTGTTAGCAAACTTTAATGTCCACTTTTCTGCTAATGAGATGGAAATGCTTCAATCATTGATGACCAGGGACGCTGATTGGGATGGGGCATTTAATTTCACCAAAGATCTTACCTTTTTAACCATTTGTGCCCAACAATTGAAAGGAGATCTCACCCAACGCATGTGCACAGAAGCAGAAATACTAGCTTATGGCCAAGGTTTTACTAAGGGAAAGTCAGGAACCAACTTCTTGAAGCCCAACATAAATTGTAATCTGAGCTCATGGGTTAATGGTTGTGAACCCGGATGGGCTTGTAAAGCTGATAAGAAAGTAGACGTTGATAGTATCAAGAAAGACATACCTGTTAGATCAGTTGATTGTCAACCTTGTTGTGAAGGCTTTTTTTGCCCTCGTGGTCTCACTTGCATGATACCCTGTCCATTGGGCTCTTATTGTCCACGTGCAGAACTCAATAAAACTAGTGGAATATGTGAACCATATCGTTATCAACTGCCTCCTGGAAAGCCTAACCATACTTGTGGTGGGGCAGATATTTGGGCAGATATTGCCAGTAGCAGTGAGGTATTCTGTTCAGCAGGGTATTATTGTAGAACAGGTTCTACTTCTCAAGAGCGGTGCTTCAGGTTGGCAAGTTGTGAGCCTAAGTCATCAAATCAAAATATTACTGCATATGGTGTCTTGGTTTTTGCTGGATTGTGTTTTTTGCTTATTATCATATACAATTGTTCTGACCAAGTTCTCGCAACTCGAGAAAGAAGACAAGCAAAATCAAGAGAAAGGGCTGCTCAAAGTGTACGAGAATCACAAGCACGTGAAAAATGGAAATCTGCAAAAGATATTGCTAAAAAACATGCAGTGGGACTACAATCACAATTATCACGTACATTTTCTCGCAAAACTTCAAAGAAGCCAGATTTAAAAGGTTTTGGTTCTAAAGATTCCGCTTTACCACCTGCTGGTACATCAAAAGGAAAGAAAAAGGACAAAAACAATCTCTCAAAAATAATAAATGACATCGAGGAAAATCCTGACAATCCAGAAGGATTTAATGTTCAAATAGGAGATAAAAATGTGAAAAAACAAGCACCAAGGGGGAAACAATTACATACTCAAAGTCAAATTTTCAAGTATGCATATGGTCAAATTGAAAAAGAAAAGGCTTTAGCAGAACAAAACAAAAACTTAACCTTTTCTGGAGTAATTTCAATGGCTAGTGACATTGATATAAGGAAAAGGCCTACCATTGAGGTCGCTTTTAAAGATTTAACCCTCACTTTGAAAGGGAAAAACAAACATCTATTAAGATGTGTGACTGGTAAATTATATCCTGGTAGAGTTTCAGCAGTCATGGGCCCATCTGGGGCTGGTAAGACAACATTTCTTTCCGCTTTAACTGGAAAAGCAGCTGGATGTCACACAACTGGGCAAGTTCTTGTAAATGGTCAGGAATCTTCTATAAGGTCATATAAAAAAATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGCAATTTAACGGTGGAGGAAAATCTATGGTTTAGTGCTAGATGCAGACTTTCTGCTGATCTACCTAAAGAAGAAAAAGTGTTAGTTGTTGAAAGAGTCATTGAGTCATTGGGTCTCCAGGCAATAAGGGATTCTTTAGTTGGGACAGTGGAGAAACGAGGAATTTCTGGAGGTCAGAGGAAAAGAGTAAACGTTGGATTGGAAATGGTTATGGAACCTTCACTTCTAATTTTGGATGAACCCACTTCTGGTTTGGATAGTTCATCTTCTCAATTATTGCTTAGAGCACTAAGACGTGAAGCTCTCGAAGGAGTAAACATATGTATGGTCCTTCACCAACCCAGTTACACATTGTTCAAGATGTTTGACGATTTCATACTACTCGCAAAGGGAGGTCTTACAGTGTATCATGGACCAGTTAACAAAGTGGAAGAGTATTTTTCAAGTATGGGCATTAATGTCCCTGACCGTGTCAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCAAGCTTAGGAGTGACCTATAAACAACTACCTGTTAGATGGATGCTTCACAATGGGTACCCTGTGCCCATGGATATGCTACAAAGTGCTGAAGGAATGGCCACCCCTAGTGGTGAAGGTTCTTCACATGGAGCAGCATCTAGTGCACAAAATGATGAAGCGCCTTCTTTTGCTGGAGAACTTTGGCAAGATGTAAAGTGCCATGTTGAGATGAAAAAGGATAACCTTCACCTTAACTTCTTAAGTTCAAATGATTTGTCTGATCGGAAAACACCTGGAGTGTTTAACCAATATAAATACTTTCTTGGAAGAGTTGGTAAGCAACGACTAAGAGAAGCTAGAACACAAGCTGTGGATTTTTTAATTTTGCTTCTAGCCGGTCTTTGCTTAGGAACACTTGCCAAAGTGAGTGATGAATCATTTGGAGCAACTGGTTACACATACACCGTGATAGCAGTATCACTACTTTCTAAAATTGCGGCGTTGAGATCATTCTCATTGGATAAATTGCACTATTGGCGAGAAAGTTCTTCAGGCATGAGTAGTTTGGCTTATTTTCTATCAAAAGATACTGTTGACCATTTTAGCACAGTTATCAAGCCATTGGTTTACCTTTCCATGTTTTATTTCTTCAACAATCCAAGATCATCAGTCACAGATAACTACATGGTTCTACTATGTTTAGTCTATTGCGTCACAGGCATAGCTTACGTGTTAGCAATTTTTTTACAACCAGGCCCAGCCCAATTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTCTCGTAGCTACCTATGACAATCAAGAAGATAGTAAATATGTGAAATATATATCTGACTTGTGCTACACCAAATGGGCTCTCGAAGCATTTGTAATATCAAATGCTAAAAGATATGCTGGAGTTTGGTTAATTAGTCGATGTGGTGCACTCTATGCTAATGGCTATGATCTTAAACATTGGTACCAATGTTTAGGCCTTCTTATCGTAATGGGAATAATTAGTCGCATACTTGCATTTTTCTGTATGATAACCTTCCAAAAGAAATAG 3495 0.3969 MSIKRRLLEVVLLTKVNRVKGMTRSKGDVGRRAINRKARAKKDRHTKVNGRERRVLLPPLSAARIFQLTRELGHKTHGETIGWLLRQAEPSIIAATGTGLSPSIDQFAPSPSSQSQSHHKNIVAASTDNQSLPLDFDLLANFNVHFSANEMEMLQSLMTRDADWDGAFNFTKDLTFLTICAQQLKGDLTQRMCTEAEILAYGQGFTKGKSGTNFLKPNINCNLSSWVNGCEPGWACKADKKVDVDSIKKDIPVRSVDCQPCCEGFFCPRGLTCMIPCPLGSYCPRAELNKTSGICEPYRYQLPPGKPNHTCGGADIWADIASSSEVFCSAGYYCRTGSTSQERCFRLASCEPKSSNQNITAYGVLVFAGLCFLLIIIYNCSDQVLATRERRQAKSRERAAQSVRESQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKTSKKPDLKGFGSKDSALPPAGTSKGKKKDKNNLSKIINDIEENPDNPEGFNVQIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMASDIDIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLYPGRVSAVMGPSGAGKTTFLSALTGKAAGCHTTGQVLVNGQESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVTYKQLPVRWMLHNGYPVPMDMLQSAEGMATPSGEGSSHGAASSAQNDEAPSFAGELWQDVKCHVEMKKDNLHLNFLSSNDLSDRKTPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTVIKPLVYLSMFYFFNNPRSSVTDNYMVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLVATYDNQEDSKYVKYISDLCYTKWALEAFVISNAKRYAGVWLISRCGALYANGYDLKHWYQCLGLLIVMGIISRILAFFCMITFQKK 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02688 1164 CDD ABCG_EPDR 553 779 - -
Pste1g02688 1164 SMART AAA_5 581 782 IPR003593 GO:0016887
Pste1g02688 1164 Pfam ABC-2 type transporter 753 1164 IPR043926 GO:0140359
Pste1g02688 1164 MobiDBLite consensus disorder prediction 850 867 - -
Pste1g02688 1164 ProSiteProfiles TCP domain profile. 41 95 IPR017887 -
Pste1g02688 1164 MobiDBLite consensus disorder prediction 847 867 - -
Pste1g02688 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 792 IPR027417 -
Pste1g02688 1164 Gene3D - 545 795 IPR027417 -
Pste1g02688 1164 ProSitePatterns ABC transporters family signature. 696 710 IPR017871 GO:0005524|GO:0016887
Pste1g02688 1164 FunFam ABC transporter G family member 24 549 791 - -
Pste1g02688 1164 MobiDBLite consensus disorder prediction 394 416 - -
Pste1g02688 1164 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 555 796 IPR003439 GO:0005524
Pste1g02688 1164 Pfam ABC transporter 575 724 IPR003439 GO:0005524
Pste1g02688 1164 MobiDBLite consensus disorder prediction 429 469 - -
Pste1g02688 1164 Pfam TCP family transcription factor 40 123 IPR017887 -
Pste1g02688 1164 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 508 1152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02688 Pste-Chr1 10632066 10646224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02688 42 99 TCP Transcription Factor Family AT2G37000 84.483 7.19e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pste1g02688 ABC2_membrane_7 5.2e-222 CL0181