Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02666 CACAACATTCAACATACCTTTCCTTTTTTTCTCTCTCTCTCTCTCTCTCGTATAATATTGTCCTACTTCTACACTTCTACTACATACTCCAAGCACGACCCAGCCCATAAACCAAGTCTGACATCACCTTACACACACAACCCCCTCCTCATTACTACTAATTAATCTAACTTAACATCTTCTAATTTTTATTGCCCTGCGACTTTCCCATTTATCACCTCATTTTCTGATGAAAAAAATTACATCTTTGGAAACACTGCGAGATCGAGGACGACCTTCTTCTGCTTCCTTCTTTTCCTTCCAGCTGAGCTCCTGCCACCTACGCCCATTCCGCCCCAACCCCTTCCTTTCCTAAAAATCAAACCTTAATTTCTGTGTTATTTATTCGATCCAACTTCACTCTCCGCTAGCGTTCTCCAAGGCACTATCCTATTGGGTCTAATCATTCCAGTTCTTCGGTTAACGTGAATTTTGGTCAGAGACCCCATCATCAGAGCCGGTAGGTGGTGAGTAAGTGAGAAAAAGGAGACCCAAAAAAAGAATTTTTGCAGGTTGACCGGTAGATATAGCAAAGGAGAGTAGAAACCTTAGAAACAAAAAACTACCCATATAAGAAAAAAGATCAAAACCAAAACTTTCTCCCCAGAAATAGTGAGGCTAAATGCCCTTAAGATTTTTTCCCCTCTAAGAAATCCTCTACTTGTTTAAGGTGCCCATGCCGGTTGACTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCTAAGCCCACAACAAAGAAGAAGCGAAATCTTCCAGGAATGCCAGATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACAAATCGGTTCGTGTGTGAAATATGCAACAAGGGATTTCAGAGGGACCAGAACCTTCAGCTTCATCGGAGGGGTCACAATCTACCATGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGGGTGTATGTGTGTCCTGAACCGACGTGCGTTCATCATGATCCTTCTAGAGCTTTGGGGGATCTCACAGGGATTAAGAAGCACTTCTGCAGGAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGTGATTGTGGCACTTTGTTCTCGAGGAGGGATAGCTTCATCACACATAGGGCTTTTTGTGATGCGTTGGCAGAGGAAAGTGCGAGATCTCATACTCAGACTGTTGCAAAGGCTAGTCCGGAGTCAGATTCGAAGGCCGTGACTGGTGATGCATCGCCTCCTGCGGCGCCAGCGACGGAGACTCCGGCTCCACCACCACCTGCAGTGCCCGTTAGTTCTCAGTCAAACAGTGTTGTTGTAGCATCGTCTGTTTTGCAGACACAAAATCCAGAGTTGCCAGAAAATTGTTCTCAAATCATAGAGGAACCACAAGCCAATACTGCTATGAATGGCAGCTGTAGCAGCACAAGCACCAGCACCAGCAGCTCAACAAGCAACAGCAATGGTGGTGCTAGCAGCAGTGTATTTGCTAGCTTGTTTGCTTCATCATCAGCATCTGCAACCACAAGCCTCCACTCTCAAACACCAGCGTTCACTGACCTGATTAGGGCCATGGGGCATCCAGATCATCCAGCAGACCTCTCAAGGCCTTCATCATCAGAGCCAATTTCTCTGTGCCTTGCCACCAGTCACGGTTCATCTATTTTTGGTACAGGAGCGCAGGAGCGGCGTCAGTACGCCCCACCACCACAGCCAGCCATGTCTGCCACTGCATTGCTGCAGAAAGCCGCCCAAATGGGTGCAGCTGCAACAAATGCCTCTTTCCTTCGTGGGTTAGGCATAGTCTCATCTTCTGCATCAACCTCATCAGGTCAGCAGGATGGTTTGCAATGGGGTCAGCAGCCAGTGGAACCAGATAATGCCTCAGTTCCTGCTGCAGGTCTTGGACTCGGGCTTCCCTGTGATGGTAGCTCTGGTCTCAAGGAGTTAATGATGGGGACTCCCTCCATGTTTGGTCCAAAGCAGACCACCCTTGATTTTCTCGGGTTGGGGATGGCAGCTGGGGGCACCCCCGGTGGAGGCTTATCGGCACTCATCACCTCAATTGGTGGTGGTCTGGATGTTACTGCTGCAGCCGCATCCTTTGGTAATGCAGAATTCCCTGGCAAAGATATTGGGAGGAACACTTGATATTTTGGATGCAAGGACTATATTTTTCAGGGCTTTAAGTTCTGGTTGTACGGCTATATGTTCCTTGTACAATGTGAAGTTGCAGTTCATTTGGGGGAGATTAGTAAGATATAGTATGCTCCTATTCAGCAATGCCACAGGCAATGCCCTAATGGGTCGTTTTGGATTAATCCGTTGCCTCTAATGTGGGCGGAAAAAGAATGTATATTTATTATTATTATAATATTAAAGAAAAGGCCCGGAAAATCTTCTTTCCAGTTTCCATGAGTAATGGCACGAGTTACAATATTATATTATGTTTTTCTTGGACCACTGGATTTGGTGAATTAAGGTGTTGTGCAAAAGGTTGAAAATTGTTGGGTTGGTGTCTTGGATTGAAATTGTGCGATAATGGAGAATTTGAAGACTACATCTACAGATCTTTTGCTTCTCAGGCATCTACAGTTTTGAATTGATCAATTTGTGAATTAATTCTACTGTTTAGATTTGTTTGGGCCATAGCTGTAGCCTGTAGACATAAATCAGGAAACTTTGATGTTTTCTTATAATGTTGGTAGTAAATGGTTGG 2849 0.4605 MPVDLDNVSTASGEASVSSSGNQTVPPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSHTQTVAKASPESDSKAVTGDASPPAAPATETPAPPPPAVPVSSQSNSVVVASSVLQTQNPELPENCSQIIEEPQANTAMNGSCSSTSTSTSSSTSNSNGGASSSVFASLFASSSASATTSLHSQTPAFTDLIRAMGHPDHPADLSRPSSSEPISLCLATSHGSSIFGTGAQERRQYAPPPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSSASTSSGQQDGLQWGQQPVEPDNASVPAAGLGLGLPCDGSSGLKELMMGTPSMFGPKQTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVTAAAASFGNAEFPGKDIGRNT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02666 521 MobiDBLite consensus disorder prediction 195 239 - -
Pste1g02666 521 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Pste1g02666 521 FunFam protein indeterminate-domain 12-like 40 108 - -
Pste1g02666 521 MobiDBLite consensus disorder prediction 9 30 - -
Pste1g02666 521 MobiDBLite consensus disorder prediction 222 236 - -
Pste1g02666 521 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Pste1g02666 521 MobiDBLite consensus disorder prediction 411 429 - -
Pste1g02666 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 480 IPR031140 -
Pste1g02666 521 SMART c2h2final6 61 83 IPR013087 -
Pste1g02666 521 SMART c2h2final6 102 132 IPR013087 -
Pste1g02666 521 SMART c2h2final6 137 157 IPR013087 -
Pste1g02666 521 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Pste1g02666 521 MobiDBLite consensus disorder prediction 1 43 - -
Pste1g02666 521 MobiDBLite consensus disorder prediction 411 436 - -
Pste1g02666 521 MobiDBLite consensus disorder prediction 272 296 - -
Pste1g02666 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Pste1g02666 521 Gene3D Classic Zinc Finger 115 196 - -
Pste1g02666 521 Gene3D Classic Zinc Finger 41 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02666 Pste-Chr1 10424362 10428026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02666 1 521 IDZ Gene Family AT5G66730 60.405 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste1g02666 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02666 1 10424362 10428026 Pste1g02666 1 10424362 10428026 ECH
Pste7g01442 7 13206026 13208404 Pste1g02666 1 10424362 10428026 ECH
Pste1g02666 1 10424362 10428026 Pste7g01442 7 13206026 13208404 PCT