Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02644 GAACATACAAATATCACACTGGTTTTGCGATCAAAGCCAGTGGAGATCGAGCGGGCTAGGTAGGAACATAACATACCACAATGAATCCTCGACCTTTTGAAAACAACATCATGCTCATTTCTCAGCTATTTCCTGCTGATGCATACACTCAAATTATTGCTCAACAAGGGGAGAATAAGAAGCCAAGACGCCGTCGTAATAAGAAGAACAAAGGAGAAAACGGTGCCTCTGAGGCCAACAAGAAGAGGAAGCTTAGTGTGGAGCAAGTTAATCTACTTGAGCAGAACTTTGGAAATGAGCATAAGCTTGAGTCCGAAAGAAAAGACAGGCTTGCAATGGAACTTGGCTTGGACCCTCGACAAGTGGCTGTTTGGTTTCAAAATAGAAGAGCACGGTGGAAGAACAAAAAACTGGAAGAAGAGTACTCCAGCCTTAAAAAATCCCATGAAGCCACCTTGCTTGAGAAATGTCACCTGGAAACTCAGGTGTTGAAGCTCAAAGAGCAACTTTCCGAGGCAGAGAAGGAAATTCAGAGGCTGTTAGAGAGTGGTGATAGAGTTCCTAGTAACAGTTCTAGTTCGCCACAGTCACAATCAATGGAAGCAGTGGACCCACCATTCTTTGGGGAGTTTGGAGTTGATGGATATGATGATGTGCTTTACGTCCCCGAGACCCATTACATGGAATGGATTAACAATCTGTATATGTAAACCAATAGAATTTAATTTTGATTTTTGTAGATAATTAATGTGAATGATCCAATGTATATTATTCCTACCTAGCTACGTAGCTAAGTGTGTTTGTTTGACTATGGTTTCGGTTTTAGAAAGTATCCATTAACATAATAATTTGCATTTTGACCTAGTATCTTCCTTTCTGTCCATTCTTAGTTTTATGTCAGCTATGGAGACATATACTGTAGTTGTTTCTTGTGTTTCTTAATTTTATAGCATAATAATATTTTATCAG 969 0.3953 MNPRPFENNIMLISQLFPADAYTQIIAQQGENKKPRRRRNKKNKGENGASEANKKRKLSVEQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKSHEATLLEKCHLETQVLKLKEQLSEAEKEIQRLLESGDRVPSNSSSSPQSQSMEAVDPPFFGEFGVDGYDDVLYVPETHYMEWINNLYM 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02644 209 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Pste1g02644 209 SUPERFAMILY Homeodomain-like 53 118 IPR009057 -
Pste1g02644 209 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Pste1g02644 209 Gene3D - 45 118 - -
Pste1g02644 209 Coils Coil 136 156 - -
Pste1g02644 209 MobiDBLite consensus disorder prediction 153 174 - -
Pste1g02644 209 CDD homeodomain 54 110 IPR001356 GO:0003677
Pste1g02644 209 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 168 IPR045224 GO:0003700
Pste1g02644 209 SMART HOX_1 52 113 IPR001356 GO:0003677
Pste1g02644 209 MobiDBLite consensus disorder prediction 28 57 - -
Pste1g02644 209 FunFam homeobox-leucine zipper protein ATHB-40 48 117 - -
Pste1g02644 209 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Pste1g02644 209 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Pste1g02644 209 MobiDBLite consensus disorder prediction 157 174 - -
Pste1g02644 209 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Pste1g02644 209 Coils Coil 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02644 Pste-Chr1 10276051 10278120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02644 1 209 Homeobox Transcription Factor Family AT4G36740 55.605 4.12e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pste1g02644 Homeodomain 1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02644 1 10276051 10278120 Pste1g02644 1 10276051 10278120 ECH