LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02643	GGCGCATTATTGTTGTGTGTGTTTCAATGAAGGAAGGTGAAAAGGTATTGGATCCGCAACTATGGCACGCGTGTGCAGGTGGGATGGTTCAGATGCCGCAAGTGAAGTCGAAAGTGTTCTACTTCCCACAGGGTCACGCAGAACACGCCCACACAAGCATTGATCTCAGGGTTCCGCCGCTTATTCTGTGCAACGTTGAAGCCGTTAAGTTCATGGCCGACCCTGACACTGACGAGGTTTTCGCGAAGCTCAGTTTGCTTCCTCTCACAAGCTCCGAACTCGGTCCTGACTCGCCGGATGACGTGGCCGAGGCTTCTTCGGAAAAGCCTGCGTCTTTCGCCAAGACTCTCACCCAATCCGACGCTAACAATGGCGGGGGGTTTTCGGTTCCCAGGTACTGCGCCGAGACCATATTTCCGCGGCTCGATTACTCCGCCGAGCCGCCGGTGCAGACGGTGGTGGCCAAGGACGTCCACGGGGAGCTCTGGAAGTTTCGCCACATTTACCGAGGCACGCCACGTAGGCACTTGCTTACTACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTGGCTGGTGATTCTGTGGTGTTTCTCAGGGCTGAGAATGGGGATTTGTGTGTTGGGATTCGGAGGGCAAAAAAGGGAATTGCAGAGAGTTCCTCTTCATCATCTCTCTGGAGTTCTGCTTCTGGGTCTGGCAATTGTGGAATTGGGCCTTACGGGCCTTTCTCTTTTTTCTTGAGGGATGAGAAGGAGAATAAGAATATGAGGAATGGTGGTGCTGGGAATTTTAGTGGAAGGGTAAAAGTGAGGCCTGAAGCTGTTACTGAAGCTCTCTCACTTGCTGCTAGTAATAGGCCTTTTGAGGTTGTGTATTACCCTAGAGCCTCTACTCCTGAGTTTTGTGTTAAGGTTTCTGCTGTCAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAAACCGAGGATGCTTCCAGGATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGACCCCATCCGCTGGCCCAATTCCCCATGGAGGCTTCTTCAGGTTACTTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCTTGGTTGGTTGAATTGGTATCAAACTTGCCAGTCATAAATTTCTCACCCTTCTCTCCTCCAAGAAAGAAGCTTAGATTTCCACAACACCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCAACTTTTTCAGGCAACCAGCTTGGGCCTAAAAGCCCCTTGTGTGGTTTTTCAGATAATGCTCCTGCAAGCATACAGGGAGCCAGGCATGCTCAAATTGGAAAATCTCCATCAAATCTCCACCTTAACAATAAACTGCACCTGGGTTTGCTTCCAACTAATATCCAGCAACTTGGAATGTATACTGGTATTTCAAATGGCAATATGACCAACCGTGAAAAGAGCAAAGAAAGCTTATCATGCTTGCTGACCATGGGGAAATCTAGTAAGAGCTTGGAGAAATCTGATGATGTTAAGAAGCACCAGTTTTTACTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCTAGAAGCTGTTCTAGAGATGTGCTTTCTCGTGGAAAAAATTCACTAGATGATGATAAGGACAAAGAGAAATGCGTTTTGGATGACTCCCACTCTGCACTCTCGCAGCAGTTTTCACCAGGAAAAGCTTCTACTGCTGAGTTCTCTTGGCAGCTAGGGCTAGATACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTAGGAAGGACCCTTGATCTATCACGGCTTGGTTCTTATGAAGAGCTGTATAGAAGACTTGCCAACATGTTTGGGATTGAAAGATCTGAGATTTTGAACCATGTGCTCTACTATGATTCAACAGGTGCTGTTAAGCAAACTGGAGAAGAACCATTCAGTGATTTCACGAAGGCAGCAAGAAGATTGACAATTCTGAGAGATTCAGGCAGCAAAAATATTAAAAGGGCTTGGATTACTGGAACTAGGAATGGTGAGCATGGACTGGATGCAAATAAAACAGGCCCTCTGAATTTGGACCCCATTTGGCAACTTGCTTTGCTTCCATTGTGCTCTCACATGCTGCTGCCTACGTGTCTCCACGTCAACAGTTGTCAA	2183	0.4732	MKEGEKVLDPQLWHACAGGMVQMPQVKSKVFYFPQGHAEHAHTSIDLRVPPLILCNVEAVKFMADPDTDEVFAKLSLLPLTSSELGPDSPDDVAEASSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKKGIAESSSSSSLWSSASGSGNCGIGPYGPFSFFLRDEKENKNMRNGGAGNFSGRVKVRPEAVTEALSLAASNRPFEVVYYPRASTPEFCVKVSAVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFSPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNQLGPKSPLCGFSDNAPASIQGARHAQIGKSPSNLHLNNKLHLGLLPTNIQQLGMYTGISNGNMTNREKSKESLSCLLTMGKSSKSLEKSDDVKKHQFLLFGQPILTEQQISRSCSRDVLSRGKNSLDDDKDKEKCVLDDSHSALSQQFSPGKASTAEFSWQLGLDTGHCKVFLESEDVGRTLDLSRLGSYEELYRRLANMFGIERSEILNHVLYYDSTGAVKQTGEEPFSDFTKAARRLTILRDSGSKNIKRAWITGTRNGEHGLDANKTGPLNLDPIWQLALLPLCSHMLLPTCLHVNSCQ	719

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02643	719	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	6	662	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Pste1g02643	719	Gene3D	-	582	668	-	-
	Pste1g02643	719	Pfam	B3 DNA binding domain	104	205	IPR003340	GO:0003677
	Pste1g02643	719	Gene3D	-	309	381	-	-
	Pste1g02643	719	Gene3D	-	102	206	IPR015300	-
	Pste1g02643	719	CDD	B3_DNA	103	204	IPR003340	GO:0003677
	Pste1g02643	719	FunFam	Auxin response factor	102	206	-	-
	Pste1g02643	719	FunFam	Auxin response factor	309	382	-	-
	Pste1g02643	719	ProSiteProfiles	PB1 domain profile.	583	663	IPR000270	GO:0005515
	Pste1g02643	719	SUPERFAMILY	DNA-binding pseudobarrel domain	92	205	IPR015300	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02643	Pste-Chr1	10233155	10236534	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02643	1	667	B3 DNA Binding Superfamily	AT4G30080	57.625	0.0	730

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Pste1g02643		B3	7.4e-22	CL0405

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste3g03206	3	24751238	24754331	Pste1g02643	1	10233155	10236534	PCT

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