Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02643 GGCGCATTATTGTTGTGTGTGTTTCAATGAAGGAAGGTGAAAAGGTATTGGATCCGCAACTATGGCACGCGTGTGCAGGTGGGATGGTTCAGATGCCGCAAGTGAAGTCGAAAGTGTTCTACTTCCCACAGGGTCACGCAGAACACGCCCACACAAGCATTGATCTCAGGGTTCCGCCGCTTATTCTGTGCAACGTTGAAGCCGTTAAGTTCATGGCCGACCCTGACACTGACGAGGTTTTCGCGAAGCTCAGTTTGCTTCCTCTCACAAGCTCCGAACTCGGTCCTGACTCGCCGGATGACGTGGCCGAGGCTTCTTCGGAAAAGCCTGCGTCTTTCGCCAAGACTCTCACCCAATCCGACGCTAACAATGGCGGGGGGTTTTCGGTTCCCAGGTACTGCGCCGAGACCATATTTCCGCGGCTCGATTACTCCGCCGAGCCGCCGGTGCAGACGGTGGTGGCCAAGGACGTCCACGGGGAGCTCTGGAAGTTTCGCCACATTTACCGAGGCACGCCACGTAGGCACTTGCTTACTACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTGGCTGGTGATTCTGTGGTGTTTCTCAGGGCTGAGAATGGGGATTTGTGTGTTGGGATTCGGAGGGCAAAAAAGGGAATTGCAGAGAGTTCCTCTTCATCATCTCTCTGGAGTTCTGCTTCTGGGTCTGGCAATTGTGGAATTGGGCCTTACGGGCCTTTCTCTTTTTTCTTGAGGGATGAGAAGGAGAATAAGAATATGAGGAATGGTGGTGCTGGGAATTTTAGTGGAAGGGTAAAAGTGAGGCCTGAAGCTGTTACTGAAGCTCTCTCACTTGCTGCTAGTAATAGGCCTTTTGAGGTTGTGTATTACCCTAGAGCCTCTACTCCTGAGTTTTGTGTTAAGGTTTCTGCTGTCAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAAACCGAGGATGCTTCCAGGATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGACCCCATCCGCTGGCCCAATTCCCCATGGAGGCTTCTTCAGGTTACTTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCTTGGTTGGTTGAATTGGTATCAAACTTGCCAGTCATAAATTTCTCACCCTTCTCTCCTCCAAGAAAGAAGCTTAGATTTCCACAACACCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCAACTTTTTCAGGCAACCAGCTTGGGCCTAAAAGCCCCTTGTGTGGTTTTTCAGATAATGCTCCTGCAAGCATACAGGGAGCCAGGCATGCTCAAATTGGAAAATCTCCATCAAATCTCCACCTTAACAATAAACTGCACCTGGGTTTGCTTCCAACTAATATCCAGCAACTTGGAATGTATACTGGTATTTCAAATGGCAATATGACCAACCGTGAAAAGAGCAAAGAAAGCTTATCATGCTTGCTGACCATGGGGAAATCTAGTAAGAGCTTGGAGAAATCTGATGATGTTAAGAAGCACCAGTTTTTACTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCTAGAAGCTGTTCTAGAGATGTGCTTTCTCGTGGAAAAAATTCACTAGATGATGATAAGGACAAAGAGAAATGCGTTTTGGATGACTCCCACTCTGCACTCTCGCAGCAGTTTTCACCAGGAAAAGCTTCTACTGCTGAGTTCTCTTGGCAGCTAGGGCTAGATACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTAGGAAGGACCCTTGATCTATCACGGCTTGGTTCTTATGAAGAGCTGTATAGAAGACTTGCCAACATGTTTGGGATTGAAAGATCTGAGATTTTGAACCATGTGCTCTACTATGATTCAACAGGTGCTGTTAAGCAAACTGGAGAAGAACCATTCAGTGATTTCACGAAGGCAGCAAGAAGATTGACAATTCTGAGAGATTCAGGCAGCAAAAATATTAAAAGGGCTTGGATTACTGGAACTAGGAATGGTGAGCATGGACTGGATGCAAATAAAACAGGCCCTCTGAATTTGGACCCCATTTGGCAACTTGCTTTGCTTCCATTGTGCTCTCACATGCTGCTGCCTACGTGTCTCCACGTCAACAGTTGTCAA 2183 0.4732 MKEGEKVLDPQLWHACAGGMVQMPQVKSKVFYFPQGHAEHAHTSIDLRVPPLILCNVEAVKFMADPDTDEVFAKLSLLPLTSSELGPDSPDDVAEASSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKKGIAESSSSSSLWSSASGSGNCGIGPYGPFSFFLRDEKENKNMRNGGAGNFSGRVKVRPEAVTEALSLAASNRPFEVVYYPRASTPEFCVKVSAVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFSPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNQLGPKSPLCGFSDNAPASIQGARHAQIGKSPSNLHLNNKLHLGLLPTNIQQLGMYTGISNGNMTNREKSKESLSCLLTMGKSSKSLEKSDDVKKHQFLLFGQPILTEQQISRSCSRDVLSRGKNSLDDDKDKEKCVLDDSHSALSQQFSPGKASTAEFSWQLGLDTGHCKVFLESEDVGRTLDLSRLGSYEELYRRLANMFGIERSEILNHVLYYDSTGAVKQTGEEPFSDFTKAARRLTILRDSGSKNIKRAWITGTRNGEHGLDANKTGPLNLDPIWQLALLPLCSHMLLPTCLHVNSCQ 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02643 719 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 662 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste1g02643 719 Gene3D - 582 668 - -
Pste1g02643 719 Pfam B3 DNA binding domain 104 205 IPR003340 GO:0003677
Pste1g02643 719 Gene3D - 309 381 - -
Pste1g02643 719 Gene3D - 102 206 IPR015300 -
Pste1g02643 719 CDD B3_DNA 103 204 IPR003340 GO:0003677
Pste1g02643 719 FunFam Auxin response factor 102 206 - -
Pste1g02643 719 FunFam Auxin response factor 309 382 - -
Pste1g02643 719 ProSiteProfiles PB1 domain profile. 583 663 IPR000270 GO:0005515
Pste1g02643 719 SUPERFAMILY DNA-binding pseudobarrel domain 92 205 IPR015300 -
Pste1g02643 719 Pfam Auxin response factor 272 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste1g02643 719 SMART B3_2 104 206 IPR003340 GO:0003677
Pste1g02643 719 ProSiteProfiles B3 DNA-binding domain profile. 104 206 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02643 Pste-Chr1 10233155 10236534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02643 1 667 B3 DNA Binding Superfamily AT4G30080 57.625 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste1g02643 B3 7.4e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03206 3 24751238 24754331 Pste1g02643 1 10233155 10236534 PCT