Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02622 ATGTATGGACTCCCTTGCTTCGCCTCATTTTCGCACCCAAACCCTAGCAAGCTTCTTCCTCTTCAATTACTCAACGCAATGCCGCCGAAGTTCGACCCCTCTCAGGTCGTCGACGTGTTCGTTCGCGTCACCGGCGGTGAGGTTGGCGCGGCGAGTTCCCTGGCCCCAAAGATCGGTCCTCTCGGTCTCTCCCCCAAAAAGATCGGAGAAGACATAGCAAAAGAAACTGCAAAGGACTGGAAGGGGCTGAGAGTCACTGTGAAGCTCACTGTGCAGAACCGTCAGGCAAAGGTCACGGTGGTACCCTCTGCGGCGGCGCTCGTCATCAAGGCCCTGAAAGAACCCGAACGTGACAGGAAAAAGACGAAGAACATCAAGCACAATGGTAACATCTCACTGGATGACGTCATCGAGATCGCTAGAGTTATGAACCCCAGGTCCATGGCCAAGGACCTTAGCGGCACCATTAAGGAGATTCTCGGGACCTGCGTCTCCGTCGGATGCACTGTTGATGGAAAGGACCCTAAAGACTTACAGCAGGAGATCACTGATGGTGACGTTGAGGTAGTGTATCCATCAATTCTTGCTATCTTTATACTGGTATTGTTCATTAGTGCATTGATGAGTTGTTTGTTGTACTCCAGTGTGGTTCATTATGTATTTTCTGTTGTGTCCATTTCCTTCACCTTGTTCAATTATCATGCGGGAAGGAAAACAAATAACGGTGGAGCTGTTTCGTGTGGCGTGGAGGCGGCAACGACGCATGCTGACTGTGGTGACGCCGGCCATGATGCTCGGTCGGTTGCGAATTAA 813 0.5129 MYGLPCFASFSHPNPSKLLPLQLLNAMPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMNPRSMAKDLSGTIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVVYPSILAIFILVLFISALMSCLLYSSVVHYVFSVVSISFTLFNYHAGRKTNNGGAVSCGVEAATTHADCGDAGHDARSVAN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02622 270 Pfam Ribosomal protein L11, RNA binding domain 101 170 IPR020783 GO:0003735|GO:0005840|GO:0006412
Pste1g02622 270 Hamap 50S ribosomal protein L11 [rplK]. 35 172 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pste1g02622 270 FunFam 60S ribosomal protein L12 27 107 - -
Pste1g02622 270 SUPERFAMILY Ribosomal protein L11, C-terminal domain 102 175 IPR036769 -
Pste1g02622 270 FunFam 60S ribosomal protein L12 108 190 - -
Pste1g02622 270 PANTHER 60S RIBOSOMAL PROTEIN L12 27 177 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pste1g02622 270 CDD Ribosomal_L11 39 170 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pste1g02622 270 SMART rl11c 39 171 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pste1g02622 270 ProSitePatterns Ribosomal protein L11 signature. 157 172 IPR020785 GO:0003735|GO:0005840|GO:0006412
Pste1g02622 270 Pfam Ribosomal protein L11, N-terminal domain 41 95 IPR020784 -
Pste1g02622 270 Gene3D - 108 190 IPR036769 -
Pste1g02622 270 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 25 113 IPR036796 -
Pste1g02622 270 Gene3D - 24 107 IPR036796 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02622 27 189 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 88.957 3.25e-106 303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02622 1 10081342 10085034 Pste1g02622 1 10081342 10085034 ECH