LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02618	GATGAAGAGAAAAGATGATGGACATAATGAAAGCAGAGAGCCAGTGTTTTGGGTCTTGCTTGATCCTCGATGGCTGCATACTCCATGTTTTGTTTCCATATTCTGCTCATGATTCTTGTCTTGGCTGCTGCTCATTCCTACCACGATGAATGTCCTGAATCTCAACCCTGTGGATATCTCGGCTATATCTCCTACCCCTTTACAGCAATTCACAATGAAGAATGTGGTACGATGAAAATAAGAGGTTGTGAAAACGAACATGCAGTTAAACAAATTCAGCTGACAGATAACCTATGGTATAATGTTGTTAGCATAGTCAACCTCCACCCTTCAGTTTTCATCCATTGCCCCGATTCTGACACTTCACAACTTCACATACTTAACAATATTACCTTCTTCAGAAGCAATCGGAGCTCCCCTGACCATTGTGACACTCCGATCCCTCCGAATATGTCCTTATATATATCCTGTCCACACTACAACATCAGCTTCACTTCTTCCCATGCTCCTAACGATTCCTTGCACATGCCCACCCTTCCATATCCATGTTTACTTTTTCAGCGTCTTCCATACGATTCCTCTTCATTTACATTCTTATTTTCTGTTTTGGAAATTAAGATAGACTTACCTCCTTCTCCTCCTAAGGGACGGAATTTGAAGGCTACAATAGGTTTATCGGTCGGAATAGCAAGCCTGGTTGCACTTGTTCTGTTGCTTGTCGTTCTTTTTCTGTACAAAGGAAAAAACAAATATCTAGGCCTCCAAAACATATCCACAAAAAGGGGTTACTCTGCTTCCTTCACAAATACAACCGTCCCAGGAAGTAGCACTGTTTACTTTGGGATCCCTGTCTTCTCCTATGAGAAACTCCAAAAGGCAACCAATGATTTTAATCAAGCTAGAGAGCTTGGAGAGGGAGGCTTTGGAACTGTTTACTACGGAACGCTTGAAGATGGGCGTGAAGTTGCAGTGAAGCGTCTGTTTGAGCGCAACTACAGACCAGTGGAATCATTCATCAATGAAATTAAGATCCTCACCCGTCTGCGCCACACAAACCTTGTGTCACTCTATGGTTGCACTTCGCGTCACAGCCGTGAATTACTGCTAGTATATGAGTACGTCCCAAACGGCACTCTTAGTTCCCATCTCCATGCTGATCAGACAAAGCCATGCTCATTGCCATGGCCTGTGAGAATGAAAATTGCCATAGAGACAGCTTCTGCATTGGCTTATCTCCATGCTAAAGACATCATTCACCGGGATGTGAAAACCAGCAACATTCTCCTTGACAATGACTTTGGTGTTAAGGTTGCGGATTTTGGTCTTTCTAGACTGTTCCCTGATGATGTCACACACATCTCCACGGCTCCGCGGGGAACACCAGGCTATGTTGATCCTGACTATCGCCTATGCTACCAGCTCACAACCAAGAGTGATGTATATAGCTTTGGGGTTGTACTTGCTGAGTTAATATCATCTCTGAAACCCGTTGATATGGACAGGAGTATGGATGATGTTAAGCTCTCAAATCTTGCCATAAGGAAGATTCAAAAAGGGGCTATTTCTGAGTTGGTGGATCCTTTTCTTGGTTTCCAGTCAGATGAGAAGTTAAAAAGGATGATACTTTCAGTGGCAGAATTGGCTTTTCTGTGTTTACAAGGGGACAAGGATTTGAGACCCTCTATGAGTGAAGTATTCGAGGAGCTGCAGAGAGTTCAAAGTGGGTGCGATGAGCCAGGGAATCTTGAGGGAATTGTACTTCATGGTGCTACTACAACTACAAGGGCTTCACAAAGCTATGCTCATCCACCTCTTCCAAACTCTCTGATGAGGCCACAGCAGCGCCTTCACCAAATACACTGATGAAAGGGATGATAAGATTGCTGCACCAAGTATCTTTGATTTCTAAGGAATGGTGCTTGATATTTTCTTATCCCCATTCTACTATGTAGAAAGCATGATGATATTTTGATAAGTGCATGTACTACTAATGACAGTGTCCCTATTTATTTACCGTCATCATATTATAAACTCGTCCTTGTCCTACCTAAATGCAGAGTAATGTATAATTTTTATGCCTTGGGGAGTTATTTTATGATAGCCAACCAAACCAGTCCAATAAAGAGAACAGATTTGGTAAGGTTTTATGTGGATAACCCCAAGAAAGAAATGTGGGATATCTGCCTAATCAGCAATAATCTTAGCAGCTAAAATTAGTTGGAGAACAGAGGAATTGGCGAGTGTTTTTTGTTATATTGGAATTGGGAAATCATTTAGGGGGAGGATGACAGAATTGGAATA	2301	0.4224	MAAYSMFCFHILLMILVLAAAHSYHDECPESQPCGYLGYISYPFTAIHNEECGTMKIRGCENEHAVKQIQLTDNLWYNVVSIVNLHPSVFIHCPDSDTSQLHILNNITFFRSNRSSPDHCDTPIPPNMSLYISCPHYNISFTSSHAPNDSLHMPTLPYPCLLFQRLPYDSSSFTFLFSVLEIKIDLPPSPPKGRNLKATIGLSVGIASLVALVLLLVVLFLYKGKNKYLGLQNISTKRGYSASFTNTTVPGSSTVYFGIPVFSYEKLQKATNDFNQARELGEGGFGTVYYGTLEDGREVAVKRLFERNYRPVESFINEIKILTRLRHTNLVSLYGCTSRHSRELLLVYEYVPNGTLSSHLHADQTKPCSLPWPVRMKIAIETASALAYLHAKDIIHRDVKTSNILLDNDFGVKVADFGLSRLFPDDVTHISTAPRGTPGYVDPDYRLCYQLTTKSDVYSFGVVLAELISSLKPVDMDRSMDDVKLSNLAIRKIQKGAISELVDPFLGFQSDEKLKRMILSVAELAFLCLQGDKDLRPSMSEVFEELQRVQSGCDEPGNLEGIVLHGATTTTRASQSYAHPPLPNSLMRPQQRLHQIH	597

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02618	597	SUPERFAMILY	Protein kinase-like (PK-like)	256	550	IPR011009	-
	Pste1g02618	597	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	394	406	IPR008271	GO:0004672\|GO:0006468
	Pste1g02618	597	Pfam	Protein kinase domain	275	544	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02618	597	CDD	STKc_IRAK	280	548	-	-
	Pste1g02618	597	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	205	587	IPR044652	GO:0004672
	Pste1g02618	597	Gene3D	Transferase(Phosphotransferase) domain 1	351	555	-	-
	Pste1g02618	597	MobiDBLite	consensus disorder prediction	573	597	-	-
	Pste1g02618	597	ProSitePatterns	Protein kinases ATP-binding region signature.	280	302	IPR017441	GO:0005524
	Pste1g02618	597	Gene3D	Phosphorylase Kinase; domain 1	251	350	-	-
	Pste1g02618	597	ProSiteProfiles	Protein kinase domain profile.	274	549	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02618	597	FunFam	Wall-associated receptor kinase-like 20	351	558	-	-
	Pste1g02618	597	SMART	serkin_6	274	549	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02618	Pste-Chr1	10048165	10050629	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02618	195	551	Receptor kinase-like Gene Family	AT1G25390	58.774	3.09e-138	414

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Pste1g02618		Pkinase	1.4e-46	CL0016