Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02609 TTAAGAAGTGTTAGTGGCAGGAGATAATAAGGAGGGAAGGGTACCCCACTAAGTGTGTCATAAATGTTAAAGCCTGGTCTTTGTGCTTGATCACAATCACTTCCTCTTATCTTAGTAACCCATATCTTAGTTGTCTCTGTCATCATTCATCTCTTGCATGCACCCAGCAATAAGTGGTACGGGTATAAGTGGTGTCTCCAAGGTCTGAAATTTATTTGCCATTTGGCTTGCTCTTCGAATTGGGTTTGTGTTCTTTTGCTACGGCAAAATGAGCACAGAAGAAAAGCCCGTGACTGAGGAATATGAAGCAGCTTCTTGCAGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCTAGGAAGAGACAGAATCTTCTCCTAGAAATACCCTCAAGAACAGAAGAGTGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCGACACCAAGTCCTAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTAAGTTCTCGCTCTGTTGATACTCCAACATATAATTCTCCTGGGTCTTCAACATCAAGAGGCAAATCATCCAAAAGAAGCCTGCTTCCAAAACTGAGCTTCAGGTATCGGACACCAACAGATATTGAAAAAACTAATACTGCAGCTCCAGATGTTTTCTCTTCAGGCATTGGAGAAAAGCCTTCAATCTCAAGATCATTGTCTCTTACTAAGATTTTTACTCCTAGGATTAAGAGAACATCATCATTACCACTTGATGAAATTAGACAATCAAACACTGAATCTTCTCATGGTGGAAGTGTTGGCGCTCCTCTAAATAAAAGAGAAGCCCAGCGGAAGATAGCTCGCTCTCTTTCAGTACCGGCCAACAACAAAGATAAAAGCTTAAGGAGGATGGATTCATTTTTCCGTGTTGTTCCTTCCACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGGCCACATCCACAACAAATGATACAGAAAATGAAGCTGCTAATGGTGAAGATATAGCTGAAGAAGAAGCTGTTTGTAGAATCTGTCTGGTTGATTTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCATCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTATGCAAGGAGGAAGTTCGGAACCTGCCGGTCACTCTATTACGTATCCAAAGTGTTCGAAATCGGAATAATGGCACAAATAGGTCTCAGCTGGAAGATGTAAATGGATACAGGCATAGGCACACTTCTAATTTGTCTGCTCAATTTAATAGGGTTTGGCAGGAAGTTCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTATTGGGTCTACTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATTTGGATTTATGCATCTGTTCAGTTTGCTCTGGTGGTTCTCTTTGCGCACATATTTTACTCTGTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTGGCCACATTTGCTGGTTTTGGTGTGGTGATGAGTGGGAGTTCTGTTCTTGTGGAGTATTTTAGATGGAGGAGAAGATTGCAGGCTTTATCAGAGCAGAGACATGGTCCTCAACTGATGCCACAAGCAGGACAAAATCCTCACACGCCTCGCTCGGGTGCAGGTCATTCCAACCACAGTCAACCTGTGGGGCAAAATCAACACAACTCAAATCAGAGCTGAATTCTAAACATATGGGGATGCAGCTAGCTTTTCATTCTGGATTTGGAATTCTTGTGTATAGGGAATTAAACTTTGTTACATCTTTTCACTAGACTTCGCTGTACAGCTTATGGTAGCAATAGAGTGACTTAGAATATAGCTTCTCATGTTATGGGATTTCTGTTTACTTATTTGTACTGGGGATTT 2026 0.4176 MSTEEKPVTEEYEAASCRTVSLPVQKVDDPMGITEETTHVPPRKRQNLLLEIPSRTEECSQDFVAIKMPPTPSPNPTPTPKRVNFLVSSRSVDTPTYNSPGSSTSRGKSSKRSLLPKLSFRYRTPTDIEKTNTAAPDVFSSGIGEKPSISRSLSLTKIFTPRIKRTSSLPLDEIRQSNTESSHGGSVGAPLNKREAQRKIARSLSVPANNKDKSLRRMDSFFRVVPSTPRVKEGNELLATSTTNDTENEAANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGTNRSQLEDVNGYRHRHTSNLSAQFNRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSVLVEYFRWRRRLQALSEQRHGPQLMPQAGQNPHTPRSGAGHSNHSQPVGQNQHNSNQS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02609 523 CDD RING_CH-C4HC3_MARCH 263 311 - -
Pste1g02609 523 SUPERFAMILY RING/U-box 259 314 - -
Pste1g02609 523 MobiDBLite consensus disorder prediction 90 112 - -
Pste1g02609 523 MobiDBLite consensus disorder prediction 90 117 - -
Pste1g02609 523 MobiDBLite consensus disorder prediction 174 196 - -
Pste1g02609 523 MobiDBLite consensus disorder prediction 484 523 - -
Pste1g02609 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 318 IPR013083 -
Pste1g02609 523 MobiDBLite consensus disorder prediction 488 523 - -
Pste1g02609 523 SMART ringv_2 262 311 IPR011016 GO:0008270
Pste1g02609 523 MobiDBLite consensus disorder prediction 21 46 - -
Pste1g02609 523 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Pste1g02609 523 PANTHER OS02G0165000 PROTEIN 33 488 - -
Pste1g02609 523 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02609 Pste-Chr1 10002211 10007338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02609 260 317 C3H Transcription Factor Family AT2G37950 49.153 3.87e-13 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03224 3 24910179 24914322 Pste1g02609 1 10002211 10007338 PCT