Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02606 CGAATGTCGAGTGGTTTTGGGGAATCAACGAGAGCGTCTGCCCCGAGCCCATCATGCTCGGGGAACAGTTCAAACGATTCTGGTGATTTTGAATGCAACATATGTTTTGATTTGGCGCAAGATCCTGTGATAACTCTATGTGGTCACCTATTCTGTTGGCCATGCCTCTATAGATGGCTCCATCATCACTCCCATTCTCAGGAGTGCCCTGTTTGCAAGGCCCTTGTGCAGGAAGAGAAATTGGTGCCTCTTTATGGAAGGGGCAAAACACAAACTGATCCCAGGACCAAATCATATCCTGGAATGGAGATTCCTCACCGCCCTTCTGGGCAGAGGCCACAAACCGCCCCTCCCCCACCGCCTCCCGAGGCCAGCCCTTTCGGGAGTTATGGCTTTGGACTCATGGGAGGCTTCATTCCCATGGCAACTGCCAGATTTGGAAACTTCACGCTTTCCACTGCTTTTGGTGGGTTCATCCCCTCGCTGCTCAACATTCATTTCCATGGCTTTCAGGATGCCACTGTTTATGGGACAACCTCTGGCTATCCCTTTGGGTTTAATGGCTTTCATGGAGGGAACACGCGGGGGTTTTCCCAGGCAACTGGCCAGGTGCAGCGGCAGGAGGACAATGTTTTGAAGAATCTGCTTATGCTGATTGGATTTCTTGTCCTTCTTACGGGAATTAACTGTTTGAGAATGCTGCTGCCTGTTTGGCTCTTTATTAACTGTATTATAAGCATCTGCCGTGAACTTGAATGCTGCCTGTTTGGTCTTTTTGAATTGATTGCTCTTTTACTGTCTTTTAATAGCTTACCCTTACAAATTCCGACAGCCTCT 837 0.4886 RMSSGFGESTRASAPSPSCSGNSSNDSGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPHRPSGQRPQTAPPPPPPEASPFGSYGFGLMGGFIPMATARFGNFTLSTAFGGFIPSLLNIHFHGFQDATVYGTTSGYPFGFNGFHGGNTRGFSQATGQVQRQEDNVLKNLLMLIGFLVLLTGINCLRMLLPVWLFINCIISICRELECCLFGLFELIALLLSFNSLPLQIPTAS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02606 279 MobiDBLite consensus disorder prediction 1 21 - -
Pste1g02606 279 CDD RING-HC_AtRMA-like 30 74 - -
Pste1g02606 279 Pfam Zinc finger, C3HC4 type (RING finger) 31 72 - -
Pste1g02606 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pste1g02606 279 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Pste1g02606 279 SMART ring_2 32 72 IPR001841 -
Pste1g02606 279 MobiDBLite consensus disorder prediction 85 124 - -
Pste1g02606 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 95 IPR013083 -
Pste1g02606 279 SUPERFAMILY RING/U-box 28 85 - -
Pste1g02606 279 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Pste1g02606 279 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02606 Pste-Chr1 9973262 9974188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02606 22 225 C3H Transcription Factor Family AT2G23780 65.072 6.27e-89 262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02606 1 9973262 9974188 Pste1g02606 1 9973262 9974188 ECH
Pste2g00891 2 9575061 9575756 Pste1g02606 1 9973262 9974188 ECH