Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02595 CAAACAGTGGTGCACTACCCGCATGCTCCACGGGGCTCACCCTTTCACGGTTTGATCCCTCCATCTTTGAACTGTGAACTAAGTCGCTAACCTTCATAGCTTCCTGCAAATCAAAACTATCGAGAATCTACGTTGAGAAATCTCAGTCCTTGGAACTAGTCCAGAAATCAAAGATGTCGGTGCTCATCGTGACCAGCTTAGGGGACCTTGTTGTCGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAACGGGTGTCTATTTCACACTGTTCAAAAGGATTTTACAGCCCAAACTGGTGATCCAACTGGCACTGGAACTGGTGGTGATTCTGTTTACAAGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAATGATGAAATTCATATTGATCTGAAACATTCCAAGACTGGAACAGTTGCCATGGCAAGTGGTGGAGAGAACCTGAATGCTTCACAGTTCTATATCACTCTGCGCGATGACCTTGATTACCTTGATGGAAAGCACACTGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTAACCAGAATAAATGAGGCTTATGTGGATGAGAAAGGAAGACCTTATAAAAATATAAGAATCAAGCACACATACATCCTGGAGGATCCTTATGATGATCCTTCTCAGCTCTCTGAGTTCATTCCAGAAGCTTCTCCTGAAGGAAAACCAAAAGATGAGGCTGATGATGAAGTGCGACTTGAAGATGATTGGGTCCCCATGGATGAACAATTAAATCCTGCAGAACTTGAGGAGGTTATTAGATCCAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCTCCAGACAATGTATTGTTTGTATGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAATTTGAGGACAAACGGTCATGTGAGCAGGCGTATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACACGTGGATTTTAGCCAAAGAGGGGGTTGCTTCAAATGTGGTTCTACAGATCATATTGCTAAGGATTGCACGGGAGATGCTACAATGAAACAACCACTATCAAAATACATCTTAAAGGATGATAATGTCCAACGAGGCGGAGATAATGCGAGATATGAAATGGTTTTTGATGAAGATAAACCAGAAAGTCCAAAGCAAGATGTAAAACACCATAACCATAGGCATGATAGGGAAGACCCAGTTGAAAGAAAAGGTAGGAAGGAAAATTTTAAAGACCATAGAAGTCAAAGGAATCAGGATATGGTAGACTCAAATAACAGAGACAGTTATGATGATAGAAGCAGAGGGCATGCAGGAAATGGAGATGACAAAGCACGATCTGCACGAGAATTGGATTCTCATGCTGACAAGAAAAACAGAGAGAGGCACATGAGAAGACATGGAGATGATGATTTCAAGCGGAAAGATGAGCGTGACTCCAGAAAAAGAGACGAAGATGAATGGAAAGACAAGCGAGACACAAGAAAAAGAGACGAAGATAGTAACTACAGAGAGAGACGAACTAGTCGAGATGATAGGAGTAACACAGATTCTAGCCATTTGGATAGAAGAACTGACCGAGATTATAGGAAGAGAACTGAAGACAGAGGAAATCAAGATATGAAGATGGATTCTGGACGAAGAAAAGGAAGTCCAGGTGATGAGGATTACAAAAATGGAAGGGATGATGTTGATTACAAACGTAGAAGGCATGACGAGGATAACAGAAATAGAAGGGAAGAACGCGGGCACAAAAGACAAGATGTTGAAGCTGATGTGGATTACAAACGTAGAAGGGAGGATGGAGATTACAGACATAGAAGGGAAGAACGTGGACATAAAAGACAAGATATTGAATCTGATGATTATCCTCATAGAAGGCGTCATGGTGACAGGAGATGATCTTGGTGTCACTATCCTAATGCTAAGCCCAACTTTTGAACTACTATCTTGGTGTCACTATCCTAATGCTAAGCCCAACTTTTGAACTACTATCTTTTATGTCTGTCCCTTTTGCTTCAATTTTCTGGTGGAGCGAGATATATTGATCATGTTTTGAACAAGGTTTTTCAAATATTCAATATTTACTGTCAAGAAACAAATTTAATGATTTTAGTATCTTTTAAATCGGAATCAGGATTGTTTGGTGCACATCACAGTTTATACTTGTGACTTTACTATTGGGG 2341 0.4045 MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASGGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYDDPSQLSEFIPEASPEGKPKDEADDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKRSCEQAYFKMDNALIDDRRIHVDFSQRGGCFKCGSTDHIAKDCTGDATMKQPLSKYILKDDNVQRGGDNARYEMVFDEDKPESPKQDVKHHNHRHDREDPVERKGRKENFKDHRSQRNQDMVDSNNRDSYDDRSRGHAGNGDDKARSARELDSHADKKNRERHMRRHGDDDFKRKDERDSRKRDEDEWKDKRDTRKRDEDSNYRERRTSRDDRSNTDSSHLDRRTDRDYRKRTEDRGNQDMKMDSGRRKGSPGDEDYKNGRDDVDYKRRRHDEDNRNRREERGHKRQDVEADVDYKRRREDGDYRHRREERGHKRQDIESDDYPHRRRHGDRR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02595 627 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Pste1g02595 627 MobiDBLite consensus disorder prediction 370 627 - -
Pste1g02595 627 Gene3D - 1 173 IPR029000 -
Pste1g02595 627 ProSiteProfiles Zinc finger CCHC-type profile. 324 337 IPR001878 GO:0003676|GO:0008270
Pste1g02595 627 Gene3D - 177 323 IPR012677 -
Pste1g02595 627 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 530 IPR035542 -
Pste1g02595 627 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Pste1g02595 627 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Pste1g02595 627 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Pste1g02595 627 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Pste1g02595 627 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Pste1g02595 627 CDD cyclophilin_RRM 4 169 IPR035538 -
Pste1g02595 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Pste1g02595 627 SMART rrm1_1 244 317 IPR000504 GO:0003723
Pste1g02595 627 FunFam Peptidyl-prolyl cis-trans isomerase 182 322 - -
Pste1g02595 627 MobiDBLite consensus disorder prediction 169 191 - -
Pste1g02595 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Pste1g02595 627 CDD RRM_PPIL4 240 320 - -
Pste1g02595 627 SMART c2hcfinal6 323 339 IPR001878 GO:0003676|GO:0008270
Pste1g02595 627 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Pste1g02595 627 SUPERFAMILY RNA-binding domain, RBD 229 322 IPR035979 GO:0003676
Pste1g02595 627 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Pste1g02595 627 Pfam Zinc knuckle 323 338 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02595 Pste-Chr1 9873024 9884178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02595 7 166 U-box Gene Family AT5G67530 41.250 8.49e-32 128