Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02570 CCACATTGGCTTTTCTTGCCTTTTGTTTATGTGCTTCCTATGCAATTGTCTATGTCTGCTTCTTCTGCTCCCCCTTCTCAGTACCTGCAAATGGGGGTGGAATCATACGTTGAATTTCTTGTTATTATTTAATATTCTTCTCTCTTCCTTCTTTTCTTATCTTTAAAATCCTGTCTGGGTATCCTTCTCAACATGACTTTCTTGTTGTTTTCTGTTCATCCACTTCCACCCTTCCCTTGATTTAATGAACACTCTGCTGCTGCCCCTTCCAAATATAAATTCTTTCCCATAATCTAACCTCTTTTCCATGATATTTATACTTTCCACTTTCTGGGGTTTCCTCTTCTCAATTCCACTTGCTGAAACACTCTTTGCCTCCTTTCAAGTTGTGGATTTTCTGGTGGGGTGTTTTGCTTGCTTCTTTTTGCTTCCATTTCAGTCTTCTAAGAGCCTACACCACTAGGTGTTCATGGAAATTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCATTCTGTGATAGGGAATGTGAGAAAGGTGCTGGTGTTAGTTGTTGGTCCTCTTCCACTTGTTCATCCTCTAGTTCCTCTTCTGCTCGCGTGTCCTCTTCTTACCTTGAACTTTGGCATGCTTGTGCTGGCCCCCTCACCTCTCTTCCTAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACATAGAACAGGTTGCCTCTTTCTCTCCTTTCACACCATTGGAGATTCCCAACTATGATCTTCAGCCACAGATCTTTTGCAGAGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTACACACAGGTTACTTTGCTCCCTCAGGCTGAGTTGGAAGGGATGCATTCAGAGGGTAAAGAACTTGAGGAATTGGGAGCAGAAGAGGAGGGAGATGACAGATCACCAACTAAATCAACCCCTCATATGTTCTGCAAAACACTAACCGCCTCCGATACCAGCACGCATGGGGGCTTTTCTGTTCCTCGAAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCCTCTCAAGAGCTTGTTGCTAAAGACCTGCATGGTGTTGAGTGGAAATTTCGTCACATTTACAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGCATTTTTGTAAGCCAAAAGAATCTTGTCTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGGGCTGTTAGACCTAGAAATGATCTTCCTGAATCAGTTATCGGTAGCCAGAACTGCTACCCCTATGTCCTTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCACGCAGACTTTGTTGTTCCCTACCAAAAGTATGTTAAAAGCATAAAGAATCCAGTGAGCATAGGGACAAGATTCAAAATGAGATTCGAAATGGACGAATCTCAAGAAAGAAGGTGTAGTAGCGGCACATTTATTGGAACCAGTGATTTGGATCCTTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAAACTAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCATCCAGTCACCTCATCACTGCAAGAGGCAGTGGATTGGTCGGCTTTGAGGAGTCTGTAAGATCACCTAAGGTCTTGCAAGGTCAAGAAAATCCAGGTTTTGTATCACTCTATTACGGATGTGACACAGTAACCAAGCCACCAGGTTTTGAGATGAGCTCCCCGAGTCATCCAAATCTTGCATCAGCCGAAGTAAGAAAGGTTACCTCTTCTGAGCTGAGTAGTGTCCACCCTTTCAGTTATGCAGGCTTTGTGGAAGCTAAAAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCCTGACAGGAAAGGTAGATTTGAACCTTGGTGCTTGGGGAATGCCCAATATAAGTTGCACAACTTTCAACCTCCACCAGGCAACCAAACCCAACTTCCAACCTTCATTGTTTCCTTATGGGGATATTCACCAAGCTGGTCAAGCTAGTTTGTTTTGCTCAAAATCCACCACTTTCCAGAGAGAGAATATCCCATTTAACAAGACATCCACTCAGGCTGGGATCATTGTAAAAGAAGTTGGTCGATCAGATATCCCAAATGAGAATAATTTGCAGGACAATATTTCTGCTGCTACTTCATTAGGGGCTGCAAATATGGGGGTTTCTAATGACAACAATGTCCAGGGACAAGTGAATGCCTGCAAACTATTCGGGTTTACTTTGTCTGGGGAAACTACTGCCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTGAGGGATGATAACAACAAAATTATGTTATGA 2512 0.4367 MEIDLNHEVTEVEKNAFCDRECEKGAGVSCWSSSTCSSSSSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHIEQVASFSPFTPLEIPNYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMHSEGKELEELGAEEEGDDRSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPYVLSSVANAISTKSKFHVFYSPRASHADFVVPYQKYVKSIKNPVSIGTRFKMRFEMDESQERRCSSGTFIGTSDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASSSHLITARGSGLVGFEESVRSPKVLQGQENPGFVSLYYGCDTVTKPPGFEMSSPSHPNLASAEVRKVTSSELSSVHPFSYAGFVEAKRFPRVLQGQEICPLKSLTGKVDLNLGAWGMPNISCTTFNLHQATKPNFQPSLFPYGDIHQAGQASLFCSKSTTFQRENIPFNKTSTQAGIIVKEVGRSDIPNENNLQDNISAATSLGAANMGVSNDNNVQGQVNACKLFGFTLSGETTAQNLQNSAKRSCTKVRDDNNKIML 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02570 680 SUPERFAMILY DNA-binding pseudobarrel domain 156 275 IPR015300 -
Pste1g02570 680 Gene3D - 327 398 - -
Pste1g02570 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 664 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste1g02570 680 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste1g02570 680 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Pste1g02570 680 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Pste1g02570 680 CDD B3_DNA 162 264 IPR003340 GO:0003677
Pste1g02570 680 FunFam Auxin response factor 327 400 - -
Pste1g02570 680 Gene3D - 162 266 IPR015300 -
Pste1g02570 680 SMART B3_2 164 266 IPR003340 GO:0003677
Pste1g02570 680 FunFam Auxin response factor 162 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02570 Pste-Chr1 9657452 9663000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02570 46 678 B3 DNA Binding Superfamily AT5G60450 57.651 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste1g02570 B3 1e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03248 3 25152078 25158257 Pste1g02570 1 9657452 9663000 PCT