Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02536 GTGAGTGGAAAATGGGCTCCAAAACAGCGGAAGATTGCTATGTTGGTTGATCAAGTGAATCTGCTTCAAAAGAAATTTGCATACTGCAATCCAAGCTTTGTGGCCAGACGAGATGTCAAGTTTGCGTTTAAGCTTGCAAGAGATGCAATTGTATCTCTGTCCACAGGGCCACCAGAGTCTGGGAGTAGGAAGAGTCTGAATGAAACCTGTGTTATATGTTTAGAGGATACTGATGTCACTCAGATTTTTTCAGTTGATGGCTGTCAACACCGATATTGCTTCTCTTGCATGAAACAACATGTAGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAGTGCCCTCACGAGGGGTGCAAGTATGAGCTTCTAATTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGACACCATGCGGCAACGAAAATTGGAAGCCTCAATTCCTGTTGCTGAAAGAATTTATTGCCCTTATCCAAGATGTTCTGCATTAATGTCAAAAACTGAGGTCTTAGAATACTCAAGAAATCTTATCCGTGAATCTGGACAATCAGGACCCCAGAAATGCTTAAAATGCCATGGCCTTTTCTGTTTTAACTGCAAGGTTCCTTGGCACAGTGGTATGACATGTTATACTTACAAAAGGATGAATCCTAATCCTCCTGCAGAAGATTTGAAGCTGAAGTCTCTGGCATCAAGGAGCCTATGGCGGCAGTGTGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTACGAATTTTGCTATAACTGTGGATCTGAGTGGAAGGACAAAAAAGCAACATGTGCTTGCCCACTTTGGGCCGAGGACTATATTTGGTTAGAGTATCATGGAAGTGATTGGGAAGATGAGAATGATGATGATGATGATGATTATAGCACTGATTGGGAAGAAGAGAATAATGATGATGATGATTATAGCACTCATTGGTATTAA 984 0.4167 VSGKWAPKQRKIAMLVDQVNLLQKKFAYCNPSFVARRDVKFAFKLARDAIVSLSTGPPESGSRKSLNETCVICLEDTDVTQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKYELLIDSCQKFLTQKLTDTMRQRKLEASIPVAERIYCPYPRCSALMSKTEVLEYSRNLIRESGQSGPQKCLKCHGLFCFNCKVPWHSGMTCYTYKRMNPNPPAEDLKLKSLASRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGSEWKDKKATCACPLWAEDYIWLEYHGSDWEDENDDDDDDYSTDWEEENNDDDDYSTHWY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02536 327 ProSiteProfiles Zinc finger RING-type profile. 70 114 IPR001841 -
Pste1g02536 327 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Pste1g02536 327 Pfam IBR domain, a half RING-finger domain 224 278 IPR002867 GO:0008270
Pste1g02536 327 Pfam IBR domain, a half RING-finger domain 142 210 IPR002867 GO:0008270
Pste1g02536 327 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 281 IPR031127 GO:0004842|GO:0016567
Pste1g02536 327 SMART ibrneu5 137 210 IPR002867 GO:0008270
Pste1g02536 327 SMART ibrneu5 223 278 IPR002867 GO:0008270
Pste1g02536 327 CDD Rcat_RBR_unk 236 271 - -
Pste1g02536 327 FunFam RBR-type E3 ubiquitin transferase 65 150 - -
Pste1g02536 327 SUPERFAMILY RING/U-box 152 215 - -
Pste1g02536 327 ProSiteProfiles TRIAD supradomain profile. 66 284 IPR044066 -
Pste1g02536 327 FunFam RBR-type E3 ubiquitin transferase 208 325 - -
Pste1g02536 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 150 IPR013083 -
Pste1g02536 327 MobiDBLite consensus disorder prediction 298 320 - -
Pste1g02536 327 MobiDBLite consensus disorder prediction 298 327 - -
Pste1g02536 327 SUPERFAMILY RING/U-box 68 149 - -
Pste1g02536 327 Gene3D - 208 325 - -
Pste1g02536 327 SUPERFAMILY RING/U-box 224 288 - -
Pste1g02536 327 CDD BRcat_RBR_unk 150 210 - -
Pste1g02536 327 Pfam Reverse transcriptase-like 1 49 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02536 Pste-Chr1 9467374 9469623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02536 1 269 C3H Transcription Factor Family AT2G19610 34.545 3.48e-48 165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02536 1 9467374 9469623 Pste1g02536 1 9467374 9469623 ECH