Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02516 ACAGAATTGGGTAGGGAAAGGGAAGTGAAGGCACTCGAATTTTCTGAATGCTTTCTCTGCGTGCAAGCCAACCTCATCCATCATCTCCAAATGTCTAACCAGTCATTGGAGAACATGTTGGCATGTTCCAAAGCACAACAGGAGAGGAAACCAAGGCCCCAGCCAGAACAAGCTCTCAAGTGCCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCCCAGCCAAGGTATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGGACACTGAGGAATGTTCCTGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCTTCTTCTTCAACATCAAAGAGAGTTCAAGATCAAGGATTCATATCCAATCCCAACAACCCACTCACTGGCCTCCCTTCATTGTCGTATGACTCCAGTGACCTCACCCTTGCGTTGGCAAGGCTGCAAAAGCAGTCATGTGGACAATTGGGTTATGATGAGCATGATCTTTCAATTTTGGGGAACCCCACAAGCACCCCATGTGATATCCTTGGCAACCCTGGCATGAACCACTCATCCACAAACCCAGGGTTCCTGGATGCCCTTAGAAGTGGTTTCCTTGGAAACCAAAATAATCTGCACAATCTGTACTATGGATATGGGGGTGGGGACATGGGGGAGGTAGACAATGGCAATGCTTGTGGTGGGGTTGGGGTTAGTGGAGAAATGATGCTTCCTTATGATCAAGATATGAGTATTGCCACCACACAGGCAGTGACAGTCACTACCATGAAACAAGAACTTTGCAATGGAAGGGAGCAAAGTGAGAATAGGGTGTTGTGGGGTTTTCCATGGCAACTCAATGGAGATACAAACATGGGTGAACTTGACTCAGGAAGAGCAAGTTGGAATGGTCTCAATTCATCTTGGCATGGACTTCTCAATAGTCCCCTAATGTAGACACAAGGCACTGATAATTATATCCTCTCATGTTTCACGAAAAATGTCAGTCTAATTATTAGGACTTTCAATCCTCTTGAGTGCTGGGTTAATAGGGGTTTGATTGATTCCCTTGAATCTTCTCTTTTTTCTTGTTTGTTTTTCCTTTTTTTTTTCCCCTTAAATTGTCAAATTTTTTGTACTACTATCTTTTAATTGGTGAATAGACTAATGAAATTTCAGAGGTTGTTTGCTAACCAAGTCAATGAAGTTGGAGAGAAGTAGATATAGAGAGCATCAATCATCATTTCCTTATTTGACAGATGAGAGAGACAGAGAATGAGAGTGATGTTTCATGGTTTAATGCAGCCTCTGATCGAG 1323 0.4354 TELGREREVKALEFSECFLCVQANLIHHLQMSNQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSTSKRVQDQGFISNPNNPLTGLPSLSYDSSDLTLALARLQKQSCGQLGYDEHDLSILGNPTSTPCDILGNPGMNHSSTNPGFLDALRSGFLGNQNNLHNLYYGYGGGDMGEVDNGNACGGVGVSGEMMLPYDQDMSIATTQAVTVTTMKQELCNGREQSENRVLWGFPWQLNGDTNMGELDSGRASWNGLNSSWHGLLNSPLM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02516 320 MobiDBLite consensus disorder prediction 104 141 - -
Pste1g02516 320 MobiDBLite consensus disorder prediction 110 141 - -
Pste1g02516 320 ProSitePatterns Zinc finger Dof-type signature. 61 97 IPR003851 GO:0003677|GO:0006355
Pste1g02516 320 ProSiteProfiles Zinc finger Dof-type profile. 59 113 IPR003851 GO:0003677|GO:0006355
Pste1g02516 320 Pfam Dof domain, zinc finger 57 113 IPR003851 GO:0003677|GO:0006355
Pste1g02516 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 194 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02516 Pste-Chr1 9352535 9354667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02516 57 320 C2C2-Dof Transcription Factor Family AT2G28510 43.617 1.70e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste1g02516 zf-Dof 6.8e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03264 3 25244027 25245716 Pste1g02516 1 9352535 9354667 PCT