LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02480	AAAGGTGAAAATGAAAATGGTGCTTACGAGGCAACCACCATAACTGGAGTGGCGTCATCTGCAAAACGACGTCGTCAATCTCTCGTTAGTCATCCGCAACCGCCTTTGCTTTTTCAACCCATGGATCGGCCGGCGACCGGACCTGGCTTCGACATGCCGATCATGCACGACAGCGACCGCTATGATTTCGTTCGCGATATTGGCTCTGGGAATTTCGGCGTAGCCAGGCTTATGAGGGATAAACAAACGCAGGGGCTTGTTGCTGTCAAGTATATTAGAACGCGGAGACACGTCAAATGTTGGATTGATTCAGGTGGTCAATCCAGATCATGTGGTTTAAATAAATTTTACACTAATCTTTTTCCCATCATTCATCATGTGTTGCAGATTGATGAAAATGTTAAAAGAGAAATCATTAATCATAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAGGTCATTTTAACACCTACCCATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAATTATTTGCACGAATCTGCAATGCAGGGCGGTTTAATGAGAATGAGGCTCGATTTTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAATGGAAGTATGTCATCGAGACTTGAAGTTGGAAAACACTTTGTTAGATGGAAGCCCAGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGGTAAGTGTTTCTTTGTCATGA	732	0.429	KGENENGAYEATTITGVASSAKRRRQSLVSHPQPPLLFQPMDRPATGPGFDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKQTQGLVAVKYIRTRRHVKCWIDSGGQSRSCGLNKFYTNLFPIIHHVLQIDENVKREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFARICNAGRFNENEARFFFQQLISGVSYCHAMEVCHRDLKLENTLLDGSPALHLKICDFGYSKVSVSLS	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02480	243	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	208	220	IPR008271	GO:0004672\|GO:0006468
	Pste1g02480	243	MobiDBLite	consensus disorder prediction	8	25	-	-
	Pste1g02480	243	Gene3D	Phosphorylase Kinase; domain 1	115	168	-	-
	Pste1g02480	243	Gene3D	Phosphorylase Kinase; domain 1	41	110	-	-
	Pste1g02480	243	PANTHER	SERINE/THREONINE KINASE	60	237	-	-
	Pste1g02480	243	SUPERFAMILY	Protein kinase-like (PK-like)	50	238	IPR011009	-
	Pste1g02480	243	Pfam	Protein kinase domain	131	238	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02480	243	Gene3D	Transferase(Phosphotransferase) domain 1	171	241	-	-
	Pste1g02480	243	ProSiteProfiles	Protein kinase domain profile.	61	243	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02480	243	ProSitePatterns	Protein kinases ATP-binding region signature.	67	90	IPR017441	GO:0005524
	Pste1g02480	243	SMART	serkin_6	61	242	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g02480	243	MobiDBLite	consensus disorder prediction	1	25	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02480	Pste-Chr1	9118671	9121155	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02480	60	239	CBL-interacting serine-threonine protein kinases	AT2G26980	36.667	3.85e-32	120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Pste1g02480		Pkinase	4.6e-32	CL0016