Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02471 AATATTGAAATCACGCAGAAGCTGCCTTGTTGTGTGAGGGACAAAAGAGAGAGAAAGAGAGAGAGATCGGAAAAGATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACGCAAGAGTGTGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTTCTCAACGAGCTCAGCGCGGCACAGCGAGACGACGCAGTGAAGTCCCTCGCCTACGAGGCAGAGGCGCGTCTGAGGGACCCCGTGTACGGTTGCGTGGGCCTCATATCCGTTCTCCAACACAAGCTCAGGCAGATCCAGGTGGAGCTCAACAACGCAAAGAAGGAACTCGCCACGTATATCGGCCCCCAAGCTTTTCAAGGCATACCCGCCCCTATTCTCCAGCAACACCCCAATAACCCCTTTCCCGGTTCCATGTATGGCAACATGCCCGCTGCAACGACCGCCGTTCATGGTGGACAGTTGGTAATTCGGGATGCCCAGCCGCCACCGCAGCATCAGATCTTGGAGGCCCAGCAGTTGGCTGCGGCTGTGGCGGCGAGGGAACAGCAGGAGATGTTTAGGAGTTACGAACACCAACAGCAGCAGGAGTTTCTGCGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAGGTGTCCCCAGCTGCTGGTTCTGCAGACCAGTTGTCTCCTTCCTTGGCTTTGGGATCCTTTGATAATGCTTACCACATGCAGCAGCCACAGCAAGGTGAACCCCATCATCATTCTCATCACATTCCTCTTGAGGCTCAGCTACTGCTCCCTCCACAGCAGAAGCAACAGCATCAACAAAGTCAGCAATCGCAACTTCCCCTTCAGTCTGAAAGCGAGGAGTGTAGGAGTTTCTTACCTGCCGGATACAAATGGATAGCAAGAGAGAGGGGGGTGAAGCACACGTGCGAGAGCGATATTCATTAATCAGATTCTGTTTGCTTGGCTTTCAAAGGAGACTACCAGCTAGACACAAATGCAAAAGTAAGATCTTCACTGATGTTTACGATCCTGCTGTCTCTTTTTTTCTTCAACTAAATTAAAAGCATGCAGTGGTTACATTTTATCTCTTTTCTTTTTGTCAAAAACTAAATTGTAAATCAGAATTCAGAATGCTTTTAAAGGCCTTTTCTCCGTCGTGTTTGTCAAATCATTTCCACCGTTAGATTTGTTGTCTTTTCGCTGTGGAAGAAAGATTTGTATAACACGCTTGCTATCCGATACATTTTTGAGTAAAAGTTACTTACTTTCCAT 1353 0.5004 NIEITQKLPCCVRDKRERKRERSEKMSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELNNAKKELATYIGPQAFQGIPAPILQQHPNNPFPGSMYGNMPAATTAVHGGQLVIRDAQPPPQHQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSASSAGGFSQVSPAAGSADQLSPSLALGSFDNAYHMQQPQQGEPHHHSHHIPLEAQLLLPPQQKQQHQQSQQSQLPLQSESEECRSFLPAGYKWIARERGVKHTCESDIH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02471 341 Coils Coil 112 132 - -
Pste1g02471 341 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
Pste1g02471 341 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 30 293 - -
Pste1g02471 341 Pfam Lateral organ boundaries (LOB) domain 33 130 IPR004883 -
Pste1g02471 341 MobiDBLite consensus disorder prediction 292 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02471 Pste-Chr1 9026851 9029887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02471 28 266 AS2 family AT5G66870 52.399 8.57e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste1g02471 LOB 1.2e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02471 1 9026851 9029887 Pste1g02471 1 9026851 9029887 ECH