LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02427	ATGGAGTGGGTGTACCTAGTGTACGTGGTTCCAACGTTGTGGGCGAGTTTCCTGATATGGAAAATGTGGGACGAGAGAAGGGAGAGGGAGTGCTACATATTGAACTACCAATGTTACAAGCCCCCAAAAGAGAGAATGCTGGGAACAGAGTTCTGCGGGCGCCTAATAAAGAGGACACAAAACCTGGGGCCAAGCGAGTACCGGTTCCTGCTGAAAGCAATAGTCAACTCGGGAATCGGCGAACAAACGTACGCCCCAAGAAACATCTTCGAGGGCCGCGAGGGAAGTCCCACATTGATGGACGGCATAGGCGAAATGGAGGAGTTCTTCAACGACACCATCGGGAAACTCCTCGACAACTCCAAGGTTTCCCCCTCCGAAATCGACGTACTTGTGGTCAACATCTCGATGCTGGCCTCCGTCCCCTCCCTCTCCTCGCGAATCATAAACCACTACAAAATGCGCCACGATGTCAAAGTCTACAACCTCTCCGGCATGGGCTGCAGCGCCAGCCTCATCTCCCTCGACATCATCAAAAACATTTTCAAGACGCACCCCAACACCCTCGCCTTGTTGATCGCTTCCGAGTCTCTCAGTCCCAATTGGTATACAGGTAGCGACAGGTCCATGATTCTCGCCAACTGTCTCTTCCGCTCCGGTGGCTGCGCTGTTCTTTTAACCAACAAGCGATCTTTACAGCCCCAAGCCTTGCTCAAGTTGAAGTGCTTGGTCAGGACACACCATGGTTCTAGAGACGATGCTTATGGTTGCTGTATTCAGTGCGAAGACGATCATGGAAGGCTCGGTTTCCACCTTGCCAAGTCTCTTCCCAAAGCTGCCACCCGTGCCTTCGTTGATAATCTTCGAGTTATATCACCCAAGATACTTCCTATCCGTGAGTTGCTCAAGTTTATGTTTCTCTCCCTTGTTAAAACACTAAACAAGAGTAACAGTCCCAAGTCTGTGTCCTCCACCGGAGCTACGAAATCCCCGTTGAACTTCAGAACCGGCGTTGATCATTTTTGCTTGCACACCGGAGGAAAAGCGGTGATCGACGGCATTGGATCTAGTTTGGATCTCACAGAGTACGATCTTGAACCTTCGAGGATGACCTTGCACCGGTTCGGAAACACGTCAGCGAGTAGCTTGTGGTACGTTCTGTCGTACATGGAAGCTAAGAAGAGGCTCAAGCGCGGTGACACGGTGTTCATGATAAGCTTTGGTGCTGGCTTTAAATGTAACAGCTGTTTGTGGGAGGTGATGAAGGACATGGGGAATCCAAATGTGTGGGACGATTGCATTGATGGCTATCCACCACACTCATTAACCAATCCCTTCATGGAGACCTATGGCTGGATCAATGAGGTTGAAGATCCCTACACTTACGAAAATATTCCCGAATTTCTCAAGTGA	1413	0.5011	MEWVYLVYVVPTLWASFLIWKMWDERRERECYILNYQCYKPPKERMLGTEFCGRLIKRTQNLGPSEYRFLLKAIVNSGIGEQTYAPRNIFEGREGSPTLMDGIGEMEEFFNDTIGKLLDNSKVSPSEIDVLVVNISMLASVPSLSSRIINHYKMRHDVKVYNLSGMGCSASLISLDIIKNIFKTHPNTLALLIASESLSPNWYTGSDRSMILANCLFRSGGCAVLLTNKRSLQPQALLKLKCLVRTHHGSRDDAYGCCIQCEDDHGRLGFHLAKSLPKAATRAFVDNLRVISPKILPIRELLKFMFLSLVKTLNKSNSPKSVSSTGATKSPLNFRTGVDHFCLHTGGKAVIDGIGSSLDLTEYDLEPSRMTLHRFGNTSASSLWYVLSYMEAKKRLKRGDTVFMISFGAGFKCNSCLWEVMKDMGNPNVWDDCIDGYPPHSLTNPFMETYGWINEVEDPYTYENIPEFLK	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02427	470	Pfam	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal	338	419	IPR013747	-
	Pste1g02427	470	PIRSF	Very_long_ch_3-ktacl-CoA_syn	2	452	IPR012392	GO:0006633\|GO:0016020\|GO:0016747
	Pste1g02427	470	CDD	CHS_like	31	418	-	-
	Pste1g02427	470	SUPERFAMILY	Thiolase-like	26	421	IPR016039	GO:0016746
	Pste1g02427	470	PANTHER	3-KETOACYL-COA SYNTHASE	13	439	IPR012392	GO:0006633\|GO:0016020\|GO:0016747
	Pste1g02427	470	Gene3D	-	75	420	IPR016039	GO:0016746
	Pste1g02427	470	Pfam	FAE1/Type III polyketide synthase-like protein	25	310	IPR013601	GO:0006633\|GO:0016020\|GO:0016747

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02427	Pste-Chr1	8638539	8639951	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02427	19	469	Acyl Lipid Metabolism Gene Families	AT2G28630	66.231	0.0	657