Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02412 ATGCAAAACCAATTCCACCGGCATGATGAAGTTCAAGATATATCTTATCACCCTATACATGAACTATACCACACTACCAAGTCTGGACAACATGTCCATACACCATCCTCAAACACAAGACTGGCAGTGAATATGAATACTCATAAGGAGAAGACAATAGAAACTGACAATGCACTCACCATATCCCATCAACTTCTATTCGTCGATGAACAAATTGTTCTTATTGATGAAACTGCATTTGATGCACCATTAATACCCAAAACGATTAATCCAAATCCACTGCTCCATCATGCTAATGCTAATACCCACGCCGAAAAACCTCGACCACGTGAGTTTCGCAAGACCATTCCTTTCGTCACCCAACTCAAAACGGTGGAAGACCCAGAAGAAGCCTTCTCCCTCTTTCACCGTTACAAACAACAGGGTTTTCGCCACTATTATCCTTCCTATGCCGCATTGCTCTACAAATTAGCTCGTTCTAGAAAGTTCGAAGCCGTTGAAACCATTCTCGCTCACATGAAAGAAACCGAAATGCAGTGCAGAGAGAGCGTCTTCATCGCTCTCTTTCAACATTACGGTCCCTCTAAAGCCGTTGAACTCTTTAATAGAATGCCTCAGTTCAATTGCACCCGCACGGTACAGTCCTTGAACGCGCTTCTCAACGTTCTAGTAGACAATGACCGGTTTGATGAAGCCAATCATGTTTTTGGTCGATCCTATGAAATGGGTTTTCGTCCTAATACGGTCACATTCAATATTATGGTTAAAGGGTGGTTGGCAAAGGGTGAGTGGACGAAAGCATGCGAGGTGTTTGATGAAATGCTTCATAAGAGAGTGCAACCGAGTGTTGTCACTTATAACAGTCTCATTGGGTTTTTGTGTAGGAAGGGTGATTTCGATAAGGCTGTGGCTTTGCTTGAGGACATGGGCCAGAAAGGAAAGCGTGCAAATGGAGTAACTTACGCACTGTTGATGGAGGGTTTGTGCTCTGCGCAGAAGTATGAGGAAGCAAAGAAGCTAATGTTTGATATGGCGTATCGCGGGTGTAAACCTCAGGCAGTGAATTTTGGAGTTTTGATGAATGATCTCGGCAAGAGAGGAAAGGTTGAAGATGCCAAGGCATTGCTACATGAGATGAAGAAAAGGGGGATTAAGCCGGATGTCGTAACATACAATATATTGGTCAATTATCTTTGCAAGGAAAGCAAGGCAGTGGAGGCTTACAAAGTCTTACTTGAGATGCAGATTGGGGGATGTGAACCCAATGCAGCTACATACAGGATGGTGGTTGATGGTTTGTGCCAGACTGGAGATTTTGAGGTTGGTTTGAGTGTTTTGAATGCAATGCTTACTAGTAAACATTCCCCTCGTTCAGAAACATTTAACTGTCTGGTTGTTGGACTGTTAAAATATGGGAATGTTGATGGTGCTTGCTTTGTTATGGAAGCGATGGAAAAGAGAAAGATAGAACTTGATTTGCAGAGTTGGGAAACTGTAATAACGTCTGCCTGCAGCGAGGATAAGGGTGTTAGTGACCTTCTGGCTGTACTTCCATCTTCATTAATGTTCCAGGCCATAACTTGGAGCGCATCATATAGAATACTTGAGCAAGTAGAAACGGCAGAAGAGGAGGGTGGGGGTGCAGAATCTCCAGTTGTGGCAGCAGAAGTGAACGTGGTTGACCAGCACCACAGAGAGACAGTGTCATTTTTCATGCATGACATTCTGGGAGGGTCCAACCCACGGCTCGAGCGGTAA 1758 0.4408 MQNQFHRHDEVQDISYHPIHELYHTTKSGQHVHTPSSNTRLAVNMNTHKEKTIETDNALTISHQLLFVDEQIVLIDETAFDAPLIPKTINPNPLLHHANANTHAEKPRPREFRKTIPFVTQLKTVEDPEEAFSLFHRYKQQGFRHYYPSYAALLYKLARSRKFEAVETILAHMKETEMQCRESVFIALFQHYGPSKAVELFNRMPQFNCTRTVQSLNALLNVLVDNDRFDEANHVFGRSYEMGFRPNTVTFNIMVKGWLAKGEWTKACEVFDEMLHKRVQPSVVTYNSLIGFLCRKGDFDKAVALLEDMGQKGKRANGVTYALLMEGLCSAQKYEEAKKLMFDMAYRGCKPQAVNFGVLMNDLGKRGKVEDAKALLHEMKKRGIKPDVVTYNILVNYLCKESKAVEAYKVLLEMQIGGCEPNAATYRMVVDGLCQTGDFEVGLSVLNAMLTSKHSPRSETFNCLVVGLLKYGNVDGACFVMEAMEKRKIELDLQSWETVITSACSEDKGVSDLLAVLPSSLMFQAITWSASYRILEQVETAEEEGGGAESPVVAAEVNVVDQHHRETVSFFMHDILGGSNPRLER 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02412 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Pste1g02412 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Pste1g02412 585 PANTHER OS03G0856100 PROTEIN 195 512 - -
Pste1g02412 585 SUPERFAMILY TPR-like 111 393 IPR011990 GO:0005515
Pste1g02412 585 Pfam Pentatricopeptide repeat domain 305 366 IPR002885 -
Pste1g02412 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Pste1g02412 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Pste1g02412 585 NCBIfam pentatricopeptide repeat 389 423 IPR002885 -
Pste1g02412 585 NCBIfam pentatricopeptide repeat 319 351 IPR002885 -
Pste1g02412 585 NCBIfam pentatricopeptide repeat 460 492 IPR002885 -
Pste1g02412 585 NCBIfam pentatricopeptide repeat 249 282 IPR002885 -
Pste1g02412 585 NCBIfam pentatricopeptide repeat 284 313 IPR002885 -
Pste1g02412 585 NCBIfam pentatricopeptide repeat 425 456 IPR002885 -
Pste1g02412 585 NCBIfam pentatricopeptide repeat 216 248 IPR002885 -
Pste1g02412 585 NCBIfam pentatricopeptide repeat 358 388 IPR002885 -
Pste1g02412 585 Gene3D Tetratricopeptide repeat domain 318 380 IPR011990 GO:0005515
Pste1g02412 585 Gene3D Tetratricopeptide repeat domain 381 451 IPR011990 GO:0005515
Pste1g02412 585 Gene3D Tetratricopeptide repeat domain 452 517 IPR011990 GO:0005515
Pste1g02412 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Pste1g02412 585 Gene3D Tetratricopeptide repeat domain 192 317 IPR011990 GO:0005515
Pste1g02412 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Pste1g02412 585 Pfam PPR repeat family 386 435 IPR002885 -
Pste1g02412 585 Pfam PPR repeat family 246 290 IPR002885 -
Pste1g02412 585 Pfam PPR repeat 460 488 IPR002885 -
Pste1g02412 585 Gene3D Tetratricopeptide repeat domain 122 191 IPR011990 GO:0005515
Pste1g02412 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02412 Pste-Chr1 8515399 8526251 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02412 192 504 Glycosyltransferase AT1G05670 27.796 2.08e-42 160