LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02406	CTATTGTTGTCGTCTATAGTGTGGATACGATTTTAGTTTGGTCCAAAATGAACATTAGGATTTTATATGTAGTGCTTCTCAAAATTTCTAGAACCCACGTTACGTGCAGCTAGAGATGGGATTAGAACATGTTTGGTTCCGTATTATATAAGAGTCTGAGCCTAGAGGAGAATATTATTGAGTGTACTTTATGATTTCGTGTGGGGGAATTATGGTAATTGAAATCGAGGTTTTGACCCATGGATTCTGATCGTCCGAGAAACCCTTCCAAAAACTTAGTTCACTCGCGCTTCTTCCTTTCTGGCTTCTATTGCTGGGATTGGGAATTCTTGACTGCTCTCCTCCTTTTTAGTTGCGCCCCTTGAAATTGTTAATTCTTACACCATTATTTTTTGTTTAATAGTAATAAGAAAAGGTTGGTTTGTGGGGTTGAAATGTCGCAACGATTGGTGCCAGCACCGTTCTTGACGAAGACGTATCAGTTGGTGGAGGATCCAGGCACGAACGAGGTCATATCCTGGAGTGAGAGTGGGAACACTTTTGTGGTGTGGAAACATGCAGATTTTGCCAAGGATTTGCTTCCTAAATTTTTTAAGCACAACAATTTCTCCAGCTTTGTTCGTCAGCTCAACACCTATGGATTCAGAAAGATTGTGCCAGAGAAATGGGAGTTCGCGAACGAGCATTTCAAGCGAGGGCAGAAGGAGCTTCTCTCGGAGATCAAACGGCGGAAGATCGTGCCCCAATCAACGGCGCCACCCCCTGGCGGCAGGGATGACGCAGGCTCCACCTCAACCTCGTCCTCGTACTCCGGTTCCAAGAACCCGGGTTCCGTCGACACAAACCCAACACCTTCTCATCAGCTATACAGCGAGAACCACAAACTGAAAAGGGATAATGAAATGCTTAGTTGCGAGCTGGCACGTGCGAGGAAGCAATGCGATGAACTTGTTGCTTTTCTCAGGAACGGTCTGATGGTGGGTCCCGATCAGATCGATCGCATCATGCGGCAAGGATCGCAAAGCGCTCTAGCGGTAGGTGAAGCTGGTAGCCGAGACTGTTTGAAACTGTTTGGTGTTTGGTTAAAAACCGAAAAAAGAAACAACCATAAAAGAAGCCGCCAAGACCAAATGGGCTTCGGTGGGCCTCGCCTCAAGGAGTCAAAGCCCGTTGTTGACTTTGGATCTGTAAATGCAATGAACAAGCAATTGCCCATAGCAAAAATCTCAACCAATGAACATTGGACACCAACTCGACACGGATGGTCGGGCTGGTGTTCAGAGGCCGGT	1289	0.4631	MSQRLVPAPFLTKTYQLVEDPGTNEVISWSESGNTFVVWKHADFAKDLLPKFFKHNNFSSFVRQLNTYGFRKIVPEKWEFANEHFKRGQKELLSEIKRRKIVPQSTAPPPGGRDDAGSTSTSSSYSGSKNPGSVDTNPTPSHQLYSENHKLKRDNEMLSCELARARKQCDELVAFLRNGLMVGPDQIDRIMRQGSQSALAVGEAGSRDCLKLFGVWLKTEKRNNHKRSRQDQMGFGGPRLKESKPVVDFGSVNAMNKQLPIAKISTNEHWTPTRHGWSGWCSEAG	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02406	285	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste1g02406	285	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste1g02406	285	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste1g02406	285	SUPERFAMILY	"Winged helix" DNA-binding domain	7	99	IPR036390	-
	Pste1g02406	285	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste1g02406	285	MobiDBLite	consensus disorder prediction	96	150	-	-
	Pste1g02406	285	Gene3D	-	3	100	IPR036388	-
	Pste1g02406	285	MobiDBLite	consensus disorder prediction	115	145	-	-
	Pste1g02406	285	FunFam	Heat stress transcription factor B-4	2	100	-	-
	Pste1g02406	285	Coils	Coil	148	168	-	-
	Pste1g02406	285	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pste1g02406	285	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	7	227	IPR027725	-
	Pste1g02406	285	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02406	Pste-Chr1	8496392	8498984	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02406	2	249	HSF	AT4G36990	49.638	2.34e-75	230

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pste1g02406		HSF_DNA-bind	1.3e-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste1g02406	1	8496392	8498984	Pste1g02406	1	8496392	8498984	ECH
	Pste1g02406	1	8496392	8498984	Pste7g01163	7	10733132	10736616	PCT