Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02399 ATGTCTTCTTCTGATTCTGCCAAACCTAATGACCCTGCGGAATGGAAAATAGAAGAAGTAATTTCAATTATTATCGTGTGTGTCATCTTTCTGGCACTAAGTGACTGCTTCGGGATATTTAAGCGTCTCTGGTGCGGAATTTGGAGAGGCAGAAACCAGGTTCAAAGGCCACTTCTAGATGAGTCCATTACTGATGACCCTTCTCTGCAGCTTCAAAGCTGTGGATTGGAGTTGTTTGTGGTGGAGTCTCTTCCCACCTTTAAGTTCAAGAAAAACGAGGGACAACAAAACAAAGCAACTAGCGTGGAGTGTGCCATTTGCCTCGGAGAGTTTGAGGAAGGGGAGTGGCTGAAACATCTTCCACACTGCACCCACAGTTTTCATGTTTCATGCATTGACACCTGGTTTGAGTCTCACTCAAGTTGTCCTCTTTGTAGATCCTATGTTCACCATCACATCCTTCAATCTTCTGCTGCTTCTCACACATTGCTACAACCTTTGGGGAGGGAAGACTTTCAAAGGGTTCAATCCATACGTTCTCATTCTCAAAATCTGTCTACTACATTGCAACCCTCACTTCCCGCTTGA 588 0.4456 MSSSDSAKPNDPAEWKIEEVISIIIVCVIFLALSDCFGIFKRLWCGIWRGRNQVQRPLLDESITDDPSLQLQSCGLELFVVESLPTFKFKKNEGQQNKATSVECAICLGEFEEGEWLKHLPHCTHSFHVSCIDTWFESHSSCPLCRSYVHHHILQSSAASHTLLQPLGREDFQRVQSIRSHSQNLSTTLQPSLPA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02399 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 155 - -
Pste1g02399 195 FunFam E3 ubiquitin-protein ligase ATL6 65 152 - -
Pste1g02399 195 SUPERFAMILY RING/U-box 79 152 - -
Pste1g02399 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 154 IPR013083 -
Pste1g02399 195 SMART ring_2 104 145 IPR001841 -
Pste1g02399 195 CDD RING-H2_EL5-like 103 146 - -
Pste1g02399 195 Pfam Ring finger domain 103 146 IPR001841 -
Pste1g02399 195 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02399 Pste-Chr1 8455375 8455962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02399 63 161 Rapid Response to Elicitors AT3G16720 46.154 8.09e-23 91.3