Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02388 ATGTTGTATCATTCAAGTGACTCTCACAGTAGTTTTATTACAAGCCGATTTGTCTTATCTGATAATGTGCCAATTCCTGCTGACAAGGGAAAAGTAGAAGAATGGTTTAAAACTAACGTTGGTCCTTTAGATAAAAGAAAAAGCAGTTTGGACCCTGAATTAGTGACGGCTGAAGCCTCTCCTAAGGTTATAAAAGTAATGAAAGATGGTAGTGGAGAATTTAAAACCATCACGGATGCCCTTAAAAGCATACCTTCTGGGAACACCAAGCGTACAATTTTGTACATTGGAGCTGGAACTTATCAAGAGAAAATCAAAGTCGATAAGTCAAAGCCTTTCGTCACCCTTTATGGAGCACCAGGAAATATGCCAAACTTGACCTTTGGGGCACTGCAGCACAATATGGCACTGTCGATAAACACTGCAGCGAGACCAGATGGGAAAAAAACAGGAGCCCAAGCAGTAGCATTACGAATTTCTGGTGACAAAGCAGCATTTTATAATTGTAAAATGTATGGATTCCAAGACACATTGTGTGATGATAGGCATAGACATTTTTTCAAAGATTGCTTAATTCAAGGCACCGTGGATTATATTTTCGGAAGTGGGAAGTCACTATATTTGAAAACTGAGCTAAGAACAATTGCTGAATCCTGGACTACATTTATAACCGCACAAGCAAGAAAAGGTGATCATGAGAACGATGGCTACTCATTTGTACATTGTGACGTTACTGGAAGTGCAAAGGGCACTTTCTTGGGCAGAGCATGGTTTTCTCATCCCAGAGTGGTCTTCGCTTATAGCACCATGAGTGACATGGTGGATAAAAAAGGCTGGAGTAATAACAATCACCCTGAACATGACAAAACTGCGTTTTTTGGAGAGTTTAAAAATCAGGGACCAGTGCAGATCCCAAGGCGTGCTCCTATTACTAGGCATGACTTCTTCAAGAAACAGTCAAACCTTTCATAAGCCTAGAGATGATTGAGGGCTCCAAATGGTTACTTCCTCCTCCAACTGTATAACTAGCTTTCATGTCTTGTAATATATTGTGTTAAATATGTAATATTTTGTTTCAAATTTAGTTTCAAATTAAAGTGAGGTCGGTGGAAACTTAGATTAGTCGATACACAAATGGTGTATCTGTTTAGGCGTCCATGCACACTATCGTGATCAATAAGCTTGGAATAATTGACTGGAATCTTGGGATTGTTGTTACTTTAAACTTTTGCTAGGACATATTCACTGAATAGGTCTCTATATATATATGCCAAAGGGAAATGT 1284 0.3894 MLYHSSDSHSSFITSRFVLSDNVPIPADKGKVEEWFKTNVGPLDKRKSSLDPELVTAEASPKVIKVMKDGSGEFKTITDALKSIPSGNTKRTILYIGAGTYQEKIKVDKSKPFVTLYGAPGNMPNLTFGALQHNMALSINTAARPDGKKTGAQAVALRISGDKAAFYNCKMYGFQDTLCDDRHRHFFKDCLIQGTVDYIFGSGKSLYLKTELRTIAESWTTFITAQARKGDHENDGYSFVHCDVTGSAKGTFLGRAWFSHPRVVFAYSTMSDMVDKKGWSNNNHPEHDKTAFFGEFKNQGPVQIPRRAPITRHDFFKKQSNLS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02388 323 Pfam Pectinesterase 64 119 IPR000070 GO:0030599|GO:0042545
Pste1g02388 323 Pfam Pectinesterase 151 302 IPR000070 GO:0030599|GO:0042545
Pste1g02388 323 SUPERFAMILY Pectin lyase-like 58 304 IPR011050 -
Pste1g02388 323 Gene3D - 16 136 IPR012334 -
Pste1g02388 323 Gene3D - 137 304 IPR012334 -
Pste1g02388 323 ProSitePatterns Pectinesterase signature 2. 192 201 IPR033131 -
Pste1g02388 323 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 57 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02388 Pste-Chr1 8398429 8400156 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02388 12 321 Carbohydrate Esterase AT1G69940 49.697 2.58e-112 328