Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02387 AGTGAAGAAAGTGAGCAGAACAGAAAATATGGTTCAACTGGAAGTCCGAAGGGGTCCCTGGACAGAACAGGAGGACTACAAACTGGTGTATTTTGTTAACATGTTTGGGGATCGTAGATGGGACTTTATAGCAAAGGTTTCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTCCACCCCGATCTCAAACGAGGGAAGCTGACACCCCAAGAGGAACACCTCGTCATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAGAAGGCTCAGGAGAAAAAGCATGCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTGTCCTCAAACAACCATGTTGTTGATTCACATGCTTCCAAAGAGGCAGGAGAAGAGAGCTTTTATGACACAGGTGAATATGGTTTGATTGGAGTTGGAGAAGGTGAAAAGGGGTACTCTCTGGATGATATATGGAAAGATATTGTTGTGTCAGAAGAGAATAACAACATTTATAGTCTGCAACCTGTGTATGTGTATGATGCTCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCACCACCAATGATGCCTTCTCCATTATGGGAGTACAATTCTTCTCACCCCCTGTGGTTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACCAAATGAACAATATTTTTCCTGCTATGAACAAGGCAACGCATTTCTAACAGGCTAATTAGGGGATTAATTCATTTTTATCAATTATCAATATTTTGTTCCTATGTGTGCCATCTGTCTCAATAAGAAGGCTTAACATGTACAGCATAGTATCTTTGAGCTTTCGGCATGATCCTCCATAGTGTGACACAGCTGTAATCGATATTAAGAGTAACTGTAGTCTATGTCAAATGTTCGTGGTTTTACTTTAAAGAAACATCCAATAGGGAGGTGGTATGTTCTGAATATTGTAAAATATACATCAAGCACTCGTTTCAAATTTATGAAATCTGATTTTGATACCCA 1092 0.4029 MVQLEVRRGPWTEQEDYKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPDLKRGKLTPQEEHLVMDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKAQEKKHAASSPVSSSCQSSLSSNNHVVDSHASKEAGEESFYDTGEYGLIGVGEGEKGYSLDDIWKDIVVSEENNNIYSLQPVYVYDAHSEEGCNFSCPPPMMPSPLWEYNSSHPLWLMDEEESNKMLFPTPNEQYFSCYEQGNAFLTG 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02387 258 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Pste1g02387 258 Gene3D - 63 124 - -
Pste1g02387 258 CDD SANT 65 106 IPR001005 -
Pste1g02387 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 128 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pste1g02387 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 55 IPR017930 -
Pste1g02387 258 MobiDBLite consensus disorder prediction 109 146 - -
Pste1g02387 258 MobiDBLite consensus disorder prediction 117 139 - -
Pste1g02387 258 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Pste1g02387 258 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Pste1g02387 258 SMART sant 7 57 IPR001005 -
Pste1g02387 258 SMART sant 60 108 IPR001005 -
Pste1g02387 258 FunFam MYB transcription factor 63 131 - -
Pste1g02387 258 FunFam Myb transcription factor 8 60 - -
Pste1g02387 258 CDD SANT 10 55 IPR001005 -
Pste1g02387 258 Gene3D - 8 60 - -
Pste1g02387 258 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Pste1g02387 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Pste1g02387 258 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02387 Pste-Chr1 8393917 8395354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02387 1 256 MYB Transcription Factor Family AT5G59780 52.918 3.37e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g02387 Myb_DNA-binding 6.7e-15 CL0123