Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02381 GAAGAAGGCCAAAACGAAGGAAAAACGCGTCACGAGCGAGAGAGGAGGAGAGGTAGGGAGTGGGAGCGAGAGAGGAAGATCTTCGATTTAGGGTTTTCAATTTCGTATACGCCAAGGTCAGTGAGCGCCTAATTCACCGAATTTCTTTCAATTCTTAATCAATTTTTGTTTTCTGTTACAGTAGAACTCGAACCCCCAAAAGCTGATTTTCATTTGGTAGTATATGATGATGATGATGACGATATCTGTGTGTGAGAAAGAAGTGTGCTTGTTATGTGCAGGCGGCGAGTGTGAGAATTTTAGAGAGAGAGGGGTGAGAACGCCGAGTGCTCTGCTGAGAGATTTCATTACCCCAGGAGGAGGAGGAGGTGGATAGATTTTCCCCCATTTTTTTTCTTTTTTATTTTCCTCAGACCGGTGGATAGTTGTTTTCCCCTCTGCATCCTTCCGTCCTCTTTCATTGTGATTTATTGTTGAAGTTTCTCATGGAGCAGCGAAAGCTTGTGGTTTTGGGGATTCCGTGGGATGTCGATACTGAGGGATTGAGGGAATATATGAGCAAGTTTGGTGAGCTGGAGGATTGCATTGTCATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGTTTCAATGGATGATGCTAAGGAAGTATTATCAAGTGAACATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTTGCGACACCGAAGGAGGAAATGAGGGCACCAGTCAAAAAAGTTACTAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCCGAAGTCATTTTGAGAAATATGGTGATATAACTGATTTGTACATGCCAAAGGATCAAGGCTCCAAAATGCATCGCGGAATTGGTTTCATTACTTTTGCAAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACGCATGAACTTGGAGGTTCTACTGTGGTGGTTGATCGAGCTACACCTAAGGCAAGAGATTTTATAGCTTGTCATTTTACTGATGATGACTTTAAGCCAGTTGGCAGAATGCCTCCTCCACAAGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGACGGGGAGATCCTGCTCGGAGAACTAGTAAGAAAATTTTTGTTGGTCGTCTTCCCCCAGAAGCAACTGCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATCTTAGATGTTTATGTTCCGAGGGATCCTAAGAGGTCAGGTCATAGAGGCTTTGGGTTTGTTACTTTTGCTGAAGATGGTGTAGCTGATCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACATCAGGTAGCAATAGATTCGGCTACACCTGTTGATGACGCAGGGCCCAGTGGGAATTTTATGATGAACAGTGTGGAGTCTTTTGGGGGATATGGCGGTCCTGTGCGATCTTATGGAAGGATGTATGGTAGCTTAGACTTTGAAGATGTGAGTATATTACATTCTGATGATTTTATGACCAATACACAACGGAAATTAGAATTTGGACTGTTTATAATTAACAATGGGGTTATGGAATTGGGAGACCATCAAGAACAGATTGGAGGTATAGACCATACTAGTAGGACACAGCTTATTGGTGCCAGCAAACTGTGGTGCTGTTATTTAATTATGATTTTTAAAGTTGTAAGAGCTATGGATTGGATTTTATTTTGTCCATCGTAAACAAGAAATACTTCTCTCTGAACATATTGTTATCTTGTATCCATTTGTACTATAGTGCAGATGATGGAAATGATATATTTTAGATCGACAATGTTAGTGCTATGAATTGTTCTTTGTGTATTGTGAGAGTGGAGGTGATGCTGATGTTTATGATTTAGAATGAGTTAGTCATTTATGCCCCAAACATTTTATTTTATTTGCGTGAGAACCTGACTACGCATTTCAGTT 2003 0.4139 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFVSMDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVENLMSETHELGGSTVVVDRATPKARDFIACHFTDDDFKPVGRMPPPQGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGDPARRTSKKIFVGRLPPEATAEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMNSVESFGGYGGPVRSYGRMYGSLDFEDVSILHSDDFMTNTQRKLEFGLFIINNGVMELGDHQEQIGGIDHTSRTQLIGASKLWCCYLIMIFKVVRAMDWILFCPS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02381 429 SMART rrm1_1 237 308 IPR000504 GO:0003723
Pste1g02381 429 SMART rrm1_1 5 76 IPR000504 GO:0003723
Pste1g02381 429 SMART rrm1_1 93 164 IPR000504 GO:0003723
Pste1g02381 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Pste1g02381 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Pste1g02381 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Pste1g02381 429 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Pste1g02381 429 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Pste1g02381 429 FunFam RNA-binding family protein isoform 1 233 316 - -
Pste1g02381 429 SUPERFAMILY RNA-binding domain, RBD 232 335 IPR035979 GO:0003676
Pste1g02381 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Pste1g02381 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 312 IPR000504 GO:0003723
Pste1g02381 429 Gene3D - 231 316 IPR012677 -
Pste1g02381 429 SUPERFAMILY RNA-binding domain, RBD 88 171 IPR035979 GO:0003676
Pste1g02381 429 Gene3D - 86 172 IPR012677 -
Pste1g02381 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Pste1g02381 429 Gene3D - 1 85 IPR012677 -
Pste1g02381 429 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 234 333 - -
Pste1g02381 429 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02381 Pste-Chr1 8351563 8356052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02381 17 284 Eukaryotic Initiation Factors Gene Family AT2G36660 23.897 2.27e-12 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02381 1 8351563 8356052 Pste1g02381 1 8351563 8356052 ECH