Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02373 ATGTCCACTTGCATTATGATATCAAGAAAGTTCAAAGTAATGCGAGTAACCAATGCATTAGCAAATGGCAGCAATCTTCTTTCTCCCTTACCTAGATTTCTATGTGCGCGTCATCATTCATCATCCAAGTTGTTTATCGCAGGGCTTTCTTATGATACCAATGAACCTATTCTGAGAGATGCTTTTGGGCAACACGGTGAAGTTGTTGAGGTTAAAGTAATATGTGATCACGTGACGGGAAAATCAAGAGGGTATGGATTCGTGCAGTTCATTTCTGAAACTACTGCAGCCACAGCTCGCAAAGAAATGAATGGCCAGATACTGGATGGCAGACGTATTCGGGTGAGTTGTGCACACAAAAGCTAGCGACCAAGTCTGTCGAACAATCATAAGACAGTTGATGGTTGCAACATATCCACCTTATTACTCGAAGTCTATATTCTTAGATTTTTTAATTTTAGTCATCCAACACATGTTTATTTAATGGCGTTGTAGATCGTCTCATCTTGAATTGGTGCTCTCATGTTTCTTGGCCTTGAAATACTAATGGGAACATTGACGGGGTATCTATAATATGAGGCTCAGATGTTTCTGTTTGTTTTGTCTTGTCTCTTTTTGCTGTAAATTGTTACTAGCAACAATGATGAGTGTAGTACAATGCAGTAACAGCTCGAAAATACTATTTTATTGACTTTGAC 698 0.3883 MSTCIMISRKFKVMRVTNALANGSNLLSPLPRFLCARHHSSSKLFIAGLSYDTNEPILRDAFGQHGEVVEVKVICDHVTGKSRGYGFVQFISETTAATARKEMNGQILDGRRIRVSCAHKS 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02373 121 Gene3D - 27 121 IPR012677 -
Pste1g02373 121 SUPERFAMILY RNA-binding domain, RBD 39 119 IPR035979 GO:0003676
Pste1g02373 121 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 21 119 - -
Pste1g02373 121 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 30 121 - -
Pste1g02373 121 SMART rrm1_1 43 116 IPR000504 GO:0003723
Pste1g02373 121 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Pste1g02373 121 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02373 Pste-Chr1 8307276 8308889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02373 33 120 Eukaryotic Initiation Factors Gene Family AT3G16380 36.364 2.91e-13 63.2