Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02372 ATGGACGTGGACGTACTGAAAACTTCCACGAGTGACACCAGCATGGACATGATGATGATGCAAATGGAAAAGTTCCCCGAATTATGTGAACCTTTTTATAACAACACCACTCTTCTCTACCCAGAAAACGAGTTCTTAAGCTCCTCCACCACTCCACCCGTTTTCTCCAACATTATAACTCCACCGCCCACTTTGATCAATCCACCACCATCTTCCTTCAATTTTGTTCTACAACAACCCCCTCTTGAACTCAACCCTTCGTTTCCGGAGAAGAAGAATTCTGTGGCGGCTATGAGGGAGATGATTTTCCGCGTAGCAGTGATGCAACCTATTCATATAGACCCGGAATCTATCAAGCCACCAAAGAGAAGGAACGTGAAGATCTCGAAGGATCCGCAGAGTGTGGCGGCGAGGCACAGAAGAGAAAGGATAAGCGAGAGAATAAGGATCCTTCAGAGATTAGTGCCTGGTGGGACCAAAATGGACACGGCTTCTATGTTGGATGAAGCCATACACTACGTGAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCAGGAGCAACTAGACCCTTGAATGTTGTTGGCTTCCCTGCTGTGTCCAACTCCAATCATAATCTTATTAATTATTCTGGTTTTGTCAAGAGTTGCCAACCCTGTCATATGCTGCCCTCTGCAACTTCTAAACAAATGCTCAGTTGA 705 0.4567 MDVDVLKTSTSDTSMDMMMMQMEKFPELCEPFYNNTTLLYPENEFLSSSTTPPVFSNIITPPPTLINPPPSSFNFVLQQPPLELNPSFPEKKNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRPLNVVGFPAVSNSNHNLINYSGFVKSCQPCHMLPSATSKQMLS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02372 234 FunFam BHLH transcription factor 131 194 - -
Pste1g02372 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983
Pste1g02372 234 Pfam Helix-loop-helix DNA-binding domain 138 177 IPR011598 GO:0046983
Pste1g02372 234 CDD bHLH_AtIND_like 129 185 - -
Pste1g02372 234 Gene3D - 127 193 IPR036638 GO:0046983
Pste1g02372 234 Coils Coil 167 187 - -
Pste1g02372 234 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 69 211 IPR045843 GO:0003700|GO:0006355
Pste1g02372 234 SMART finulus 134 183 IPR011598 GO:0046983
Pste1g02372 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 187 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02372 Pste-Chr1 8302380 8303084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02372 10 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 57.416 1.15e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g02372 HLH 1.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02372 1 8302380 8303084 Pste1g02372 1 8302380 8303084 ECH