Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02352 ATGAATTGGGTTCGTGGAGACTCTCTTGGCACTGGAAGCTTCGCCACCGTTAACATCGCCGTACCCACAAATGCTTCCACTCTCCTCCCTTCGCTCATGGCGGCCAAATCCTCCCACGCTCACACCTCCTGCATGCTCAAACACGAGAAACAACTACTCGATCGTCTCGCTTCTTCCCCTTACATCATCAATTGTTTCGGCCACGATCACACCGTTGAAAACGGCGAGGAGTTCTACAACATTTTTCTCGAATACGCCGCCGGTGGTTCTCTCGCCGATCAGGTTAAAATACACGGCGGGAGGCTCCCGGAGCCTTACGTTCGCCGATGCACCAGGACCATCGTTGAAGGTCTCAACCATATTCACGCCAGTGGTATCGTTCACGGTGACCTCAAGCTTGAAAACATTCTCGTTTTCGACAATGGCGATGTTAAAATCGCGGACTTTGGGCTGGGCAAGGAGAAAGGAGAGAAACAGAGGAAGTTGGAGTGCAGGGGGACGCCGCTGTTTATGTCGCCGGAATTGGTAAACGAGAATGAGTGCGAGTCGCCGGCGGATATATGGGCCCTTGGGTGCGCTGTGGTGGAGATGATAACCGGAAAACCCGCATGGGAGGTTGACGGGTCGAATATGTGGTCGTTGTTGATCCGAATTGGAGTGGGAGAAGAATTGCCCAAGATTCCAGAAGAGTTATCAGAAGAGGGGAAAGATTTCCTTTTGAAGTGTTTGGTTAAGGAGGCTGAGAAGAGGTGGAGCGCTGAGATGCTTCTGAATCACCCTTTCATCAAGGCTGACGCTGACACGTTTTGGTTTGACAAAGTTAACGAGCGGTTACTGTTACCGTCACCCAGGACACACTTCGATTTCCTTCACCGGGCATCCACAGTAACGGTGTCGGCTCCGTCTTCTCCGGATTCTGAGGACTGGCATATGCGGGAATTGGGTTCGTCCTGTTCGGCGGAGAGTCGGGTCCAGCGGCTTCTCACCAATGAGAGGCCGGAAGAATGGTCAGAATCGGAAGGCTGGACCCGCGTTAGGTGA 1041 0.5283 MNWVRGDSLGTGSFATVNIAVPTNASTLLPSLMAAKSSHAHTSCMLKHEKQLLDRLASSPYIINCFGHDHTVENGEEFYNIFLEYAAGGSLADQVKIHGGRLPEPYVRRCTRTIVEGLNHIHASGIVHGDLKLENILVFDNGDVKIADFGLGKEKGEKQRKLECRGTPLFMSPELVNENECESPADIWALGCAVVEMITGKPAWEVDGSNMWSLLIRIGVGEELPKIPEELSEEGKDFLLKCLVKEAEKRWSAEMLLNHPFIKADADTFWFDKVNERLLLPSPRTHFDFLHRASTVTVSAPSSPDSEDWHMRELGSSCSAESRVQRLLTNERPEEWSESEGWTRVR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02352 346 Pfam Protein kinase domain 5 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g02352 346 ProSiteProfiles Protein kinase domain profile. 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g02352 346 FunFam Mitogen-activated protein kinase kinase kinase 17 2 296 - -
Pste1g02352 346 CDD STKc_MAPKKK 2 262 - -
Pste1g02352 346 SUPERFAMILY Protein kinase-like (PK-like) 3 302 IPR011009 -
Pste1g02352 346 Gene3D Transferase(Phosphotransferase) domain 1 93 279 - -
Pste1g02352 346 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste1g02352 346 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Pste1g02352 346 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 337 - -
Pste1g02352 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Pste1g02352 346 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02352 Pste-Chr1 8202904 8203944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02352 1 346 MAP Kinase Kinase Kinase AT4G36950 50.857 1.67e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pste1g02352 Pkinase 2.7e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02352 1 8202904 8203944 Pste1g02352 1 8202904 8203944 ECH
Pste1g02352 1 8202904 8203944 Pste7g01137 7 10488129 10489163 PCT