Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02344 ATGGGAGGGTCCAATGGAGTTCCTGCGAGTTCTCGATGGAACCCTACAAAAGAGCAAATAAGCATGCTAGAGAACCTGTATAAGCAGGGAATAAAAACTCCCAGTGCTGAGGAGATACAGCAGATAACTGCTAGGCTTAGGGCCTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTCCAGAATCACAAAGCCAGGCAGAGACAGAAGCAGAAACAAGAAACCATAGCTTACTTCAATCGCTTTCTCCATACGCCTCAGCCTTTTTTTTCTCCGCCAAATTGCCCAAATGGCATGTGTGCCGCATATTGTATACCTCAGGCACAGAGTGAGGTTGGGTTCTATCCCCCACATCCAAAGGTTATTGTACCCGTAGGTTTTATGAAGAGCCCATCTGAGAAAGTTGTGGCCACAGGAATGTTAAACATGATGAATGGCCCGGTGGTATATGACGGCATGCAACAGAGAATCTCGGATTCTAACTTCAGCTTCAGCAACCAAGAAACGTTGGATCTCTTTCCTCTGCACCCAACTGGCTTTTTGGAAGGAAAAACAACAGACCAGGTGTCTTCTCTGGCTTCAGTTTCTGCTGATAGTTCCACTGATACACCCTCTGCTTATCATATCAATGAAGATGATGCTTGTCCACTAAACCAACCCTTCTTTGATTTTTTTACTACTTCTGGACAAGCTTCTTAG 702 0.4501 MGGSNGVPASSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNRFLHTPQPFFSPPNCPNGMCAAYCIPQAQSEVGFYPPHPKVIVPVGFMKSPSEKVVATGMLNMMNGPVVYDGMQQRISDSNFSFSNQETLDLFPLHPTGFLEGKTTDQVSSLASVSADSSTDTPSAYHINEDDACPLNQPFFDFFTTSGQAS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02344 233 ProSiteProfiles 'Homeobox' domain profile. 6 71 IPR001356 GO:0003677
Pste1g02344 233 SMART HOX_1 8 75 IPR001356 GO:0003677
Pste1g02344 233 CDD homeodomain 12 72 IPR001356 GO:0003677
Pste1g02344 233 Gene3D - 10 78 - -
Pste1g02344 233 Pfam Homeodomain 10 70 IPR001356 GO:0003677
Pste1g02344 233 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 4 202 IPR044555 GO:0003700|GO:0099402
Pste1g02344 233 FunFam WUSCHEL-related homeobox 4 10 77 - -
Pste1g02344 233 SUPERFAMILY Homeodomain-like 11 77 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02344 Pste-Chr1 8141451 8142760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02344 6 227 Wox Gene Family AT5G59340 43.952 7.78e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pste1g02344 Homeodomain 4.8e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02344 1 8141451 8142760 Pste1g02344 1 8141451 8142760 ECH