Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02336 CAGCGCGGCAAAATTAGAACAATTTCCCGCGTCCTCTTGAAAACCCTCATCGCCGCATTGACGTTTTGTTTGGCCAACTCACTCAGTCGTAGTTCACATCACTGAGAAAGATAGAGAAATGGCGGATGAGGAGCCTGTAAGCGGAAGGCGAAGGGCGCGGGGACCGGAGGCCACCGCCCGCAGCAAAGCGTTGGAGCGGCTCAAGGCTCGCCTGGGCGGTGGTCGTCGATCCGATGGCTCCGCCCCCCAAATCAGGTTAGAAAACCCTATTTACGACACCGTTCCCGAGGACGAGTACAACGCCCTCGTTGCCAAGCGTCGCGAACAGGCGCGATCCTTCATCGTCGACGATGAAGGAATCGGCTACGGCGACGAGGGCGAGGAAGAGGACTGGTCGCAGGCCGGTTTCTCCCTCTCTGACGAATCCGACGGCGAATTGGAGAAGCCAAAGCGGAAGAAGGTCGAAAAGAAGGATCCTCAGCCGAAACGACCTTCTTCGTCGCTCTCCGCCGCCGCGGCTATGATGGGAGGCCAGAGGCTGTCGTCGATGTTCACTTCGTCTGTTTTCAAGAAGAGCAGAGATGACAAAGCCTGTGAGAGCCTTGTCGACGATTTGATTGCCGAGTTTGCGGCGGACGAGAGCGATAAACTGAAGCGTAGAAGAGCTTATGCTAATTCTTCTTCCTCTTCCGTCACAAACGATGCAAAGCAGATTAACACCACGTTTAAGGATAAGCCTTCCGTTGATTTGATCGGAGCTTCTTCGTTGCCAGCAAATGGTAACAGTGTGCCTATTAAGGTTGTTGAGAGTAATGGCTTAGAGCAAAAGAGTGAGGTAGTAAGTGAAATTGTAGACTCGGCGCGTGAGAGTTTTGGAAATGGAGAGTCACCAGTGATGGAACCAGAGGATTGTAAAATTAATGAGGATTTCTTTGAAGAGAAAGAGGTGAAGAAAGTTGAAATTGAAGTGAAGTCGGGAGCTAAAAAGGAGGTTTTCACTTTGAATGCGAAAGTTAAAGAAGAGGAAGATCCCGAATTGTCTGCGACTACTGGTTGGAAGGAAACAATAAGAGGTGCTGGTGGGATTGGTGTTACTGATTCGAAGGATGCTTTGCAGAATCAACAACAATCAGAGTTTGATTTGGAAGAAGATGGATCGCTGCCCTTCTATATATTAGATGCATATGAGGAGTTTTATGGAGAAAACCGGGGCACCCTTTATCTGTTTGGGAAGGTCAAAGCAGGGGATTTGTATCAGAGTTGCTGTGCTATTGTGAAGAACATGCAGAGGTGTGTTTATGCAGTTCCAAGCCGACCTCTGCATCGCACTGAAGAGATGATGAGTCTTGTGAGAGATGTCCAAGAGTCTCAAATTTCTTCTGCAGATTTCCTTAAAAAGCTGCAAGATGCAGTATCTGATGTTAAAAATGAGATAGCACAGCATCTGGTGAATTTGGAAGTTTCTAATTTTACCATGGCTCCTGTTAAGAGGAAATATGCATTTGAACGATCTGAAATTCCTTCAGGTGAAAATTATGTGGTGAAAATAAATTATTCATTCAAGGATCCAGTACTTCCAGTAGATCTCAAAGGAGAAAGTTTTTGTGGTCTCTTAGGAGCTGGTTCCAGTGCTCTCGAGCTTTTTCTGATTAAAAGAAGGATAAAGGGACCTTCATGGCTACAGGTTTCAAATTTTTCTACAAGCTCAGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAACTCATAAAGAGTTCACCTCCTTCAAAAATCACTTCTAAGATACCTCCTGTGGTTGTTGCAGCAATAAACTTGAAAACAATCATAAATGAAAAACAGAACATCAATGAGATTGTATCAGCATCCGTTGTCTGTTGCAACATGGTTAAGATTGACACTCCTATGATGGCTTCGGAGTGGAGGAGACCTGGTACGCTAACCCATTTTACTGTTGTTCGTAAACTTGATGGGAGTATATTTCCGATGGGGTTCAACAAGGAGGTTACAGACAGAAACTTACAAGCTGGTTCAAATATTCTGAGTGCTGAAAGCAGTGAAAGAGCTTTGTTGAATCGCTTGATGCTAGAATTACACAAGTTGGATAGCGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGACATTCTTCTCCATAGATGTCAGGCTTGCAAAGTAGCAAGCAACATCTGGTCTAAATTAGGCCGCCTGAACCGTTCTACAATGCCTAAACTTGGAAGAAGAAGCAAGGTTTTTGGTTCTGGAGCAGATCCTGCTATCATGTCTTGCATTGCTGGCCGGCTTCTTTGTGATACATACTTGTGTTCTCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACTCATCTTACAAAATCACATCTAAACAAGTCTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAAACAGCAGAGTCCCTAATGGAGCTTATGGAATACGGTGAAACAGATGCGTGGTTGTCAATGGAGCTCATGTTTTATTTAAGTGTTCTTCCGCTCACACGTCAGCTTACTAATATAAGTGGTAATCTGTGGGGGAAAACGCTTCAGGGTGCTCGAGCACAGAGAGTTGAATATCTTTTGCTGCATACTTTCCATGCGATGAAATATATGGTGCCAGACAAGTTCTCAAACTATGGAAAAGAAACAAAATTGACAAAACGCAGAGTAACTCATGATGTGGATGATAGCAACTTTGATGTAGATATTGATGATGCAAACTATGACAATGTTGCTTCTGAATTTGATAATAAGAAAAGCAAAAAGGGCCCTTCTTATGCTGGGGGACTGGTGTTGGAACCAAAGAAGGGTCTATATGACAAATACATATTGCTTCTGGACTTCAACAGTCTTTATCCTTCTATTATTCAGGAATATAATATCTGCTTCACAACTGTTGAAAGATCTTTGGATGGATCTTTTCCTCGTCTTCCATCTAGTAAAACAACTGGAGTCTTGCCAGAGGTGCTGAAAAATCTGGTTGATCGGAGGAAAATGGTAAAATCATGGATAAAGAATGAAAAAAGGAAGAATGAAAAAGCTGATCCTATTAAAGTTCAGCAACTGGATATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGTATGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCCAAGCCGATAGCTGAGCTCATAACTTCCCAAGGAAGGGAGATACTACAGAGTACAGTTGATCTTGTTCAGAATAACTTGAATTTGGAGGTGATCTATGGTGATACTGATTCGATCATGATTTACAGTGGGTTAGATGATATTGAGGAAGCTAATAAAATTGCTGTAAAGGTTATTCAAGAGGTCAATAAAAAGTATACATGCTTGGAAATTGATCTTGATGGTTTATATAAAAGGATGCTGCTTCTTAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTTTAAAGATGGCACTCCATACGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGAGACTGGAGCTTATTAGCTAAAGAACTAGGAGATTTTTGCTTGTCTCAAATTTTGTCAGGAGGGTCATGTGAAGATGTAGTGGAGTCAATCCACAACTCGCTAATCAAGGTACAAGAAGAAATGAGGAATGGACAAGTAGCATTAGAGAAATATGTCATCACAAAGACATTGACTAAACCTCCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCGCAAAGATTGAAGCAACAAGGCTACCCTTCTGGTTGCTCTGTTGGTGATACAATCCCGTATATAATATGCTACGAACAGGGTGGTAGTTCAGGCAGTGCAGCTGGCATTGCTCAACGTGCCAGACATCCTGATGAACTTAAACGAGAACAAGGAACATGGCTGATTGACATTGATTACTATTTATCACAACAGATCCACCCTGTGGTATCACGTCTTTGTGCATCAATTCAGGGAACAAGCCCAGAAAGACTGGCTGATTGTTTAGGGCTTGACTCGTCAAAGTTTCATCATAAGTCAAGTGAAGCTCTAAATTATGATTCTGCAAGCCCATTCTTGTCTGTTGCTGATGATGAAGAGAGGTATCGGGGTTGTGAGCCTTTGGTCTTCTCATGCCCCAGCTGCTCTGGCACATTGGATTGCCCACCTGTCTTTAAATCTATTTGTTTGTTGGTAAGTGAAACAACCAGCGTAGCTACTGAGGAATCTGACTACAATTTCTGGCGTAAGCTGTGCTGTTCTAAATGCCCAGGAGATGTTAAAATTTCTTCTGCAATGATAGCTAATCAGGTCAAAAGGCAAGCAGAGAGGTTTGTTTTAATGTACTATAGAGGTTTACTAATGTGTGATGATGAAACTTGTAAGCATACAACGCGAAGTGTAAGCCTTCGGGTGGTTGGTGATTCAGAGAGAGGAACTATTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGTACACTGAAGCGGATCTATACAAGCAGCTCTCTTATTTTTGCCATGTATTCGATACTGTTTCTTGTATAGAAAAGGTGGAGGCGAAATCCAGAATATCAATAGAGAAAGAGTTGAGCAAAATTAGGCCGCTGATTGATCCAGCAGCATCAACAGCACAGAAGATGAGGGATCGTTCTGCCTTCGGGTGGGTGAGACTGGAGGATCTGGTTATTACAGTTTAATTTTCAGATTTGATGCCAAAGTCAGTTAATTTAGTGTAGCAAAAGTGATGCACACGTGAATCTACTTAACCAAGGGGGTTTATCAGCGGGAGTCATGATGTCCATTGGTGTTACAAGCAAGGCTGATCGATCAAATCATGCTCTGGCAGTCCAGGGCTGATTAAATCTACCAAATCCAATACCCCTCTACAGTTTAAGTATAGCATCAATCTGTTCTTGACTGCGTAAACTGTCCATAGAACAAATTCAAATGTTCTGTAAATATGTTTTATGTATTTTATATTTTACAAATGCTCGCCAATATGTTGAAGAGGTGATCAACTGTAATTTTACTCTCTACTTTAGTTATTCTTGTAAAATTAATTTTAAAAGGATTGATTTATT 5113 0.4226 MADEEPVSGRRRARGPEATARSKALERLKARLGGGRRSDGSAPQIRLENPIYDTVPEDEYNALVAKRREQARSFIVDDEGIGYGDEGEEEDWSQAGFSLSDESDGELEKPKRKKVEKKDPQPKRPSSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKACESLVDDLIAEFAADESDKLKRRRAYANSSSSSVTNDAKQINTTFKDKPSVDLIGASSLPANGNSVPIKVVESNGLEQKSEVVSEIVDSARESFGNGESPVMEPEDCKINEDFFEEKEVKKVEIEVKSGAKKEVFTLNAKVKEEEDPELSATTGWKETIRGAGGIGVTDSKDALQNQQQSEFDLEEDGSLPFYILDAYEEFYGENRGTLYLFGKVKAGDLYQSCCAIVKNMQRCVYAVPSRPLHRTEEMMSLVRDVQESQISSADFLKKLQDAVSDVKNEIAQHLVNLEVSNFTMAPVKRKYAFERSEIPSGENYVVKINYSFKDPVLPVDLKGESFCGLLGAGSSALELFLIKRRIKGPSWLQVSNFSTSSASQRVSWCKFEVTVDSPKLIKSSPPSKITSKIPPVVVAAINLKTIINEKQNINEIVSASVVCCNMVKIDTPMMASEWRRPGTLTHFTVVRKLDGSIFPMGFNKEVTDRNLQAGSNILSAESSERALLNRLMLELHKLDSDVLVGHNISGFDLDILLHRCQACKVASNIWSKLGRLNRSTMPKLGRRSKVFGSGADPAIMSCIAGRLLCDTYLCSRDLLKEVSYSLTHLTKSHLNKSRKEVAPHEVPKMFQTAESLMELMEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAMKYMVPDKFSNYGKETKLTKRRVTHDVDDSNFDVDIDDANYDNVASEFDNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSKTTGVLPEVLKNLVDRRKMVKSWIKNEKRKNEKADPIKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPIAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIEEANKIAVKVIQEVNKKYTCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLSQILSGGSCEDVVESIHNSLIKVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYPSGCSVGDTIPYIICYEQGGSSGSAAGIAQRARHPDELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEALNYDSASPFLSVADDEERYRGCEPLVFSCPSCSGTLDCPPVFKSICLLVSETTSVATEESDYNFWRKLCCSKCPGDVKISSAMIANQVKRQAERFVLMYYRGLLMCDDETCKHTTRSVSLRVVGDSERGTICPNYPRCNGRLVRKYTEADLYKQLSYFCHVFDTVSCIEKVEAKSRISIEKELSKIRPLIDPAASTAQKMRDRSAFGWVRLEDLVITV 1536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02336 1536 Gene3D Helix hairpin bin 966 1017 - -
Pste1g02336 1536 MobiDBLite consensus disorder prediction 178 199 - -
Pste1g02336 1536 MobiDBLite consensus disorder prediction 184 199 - -
Pste1g02336 1536 MobiDBLite consensus disorder prediction 1 34 - -
Pste1g02336 1536 Pfam DNA Polymerase alpha zinc finger 1331 1532 IPR015088 GO:0003887|GO:0006260
Pste1g02336 1536 Pfam DNA polymerase family B, exonuclease domain 380 756 IPR006133 -
Pste1g02336 1536 CDD DNA_polB_alpha_exo 563 814 - -
Pste1g02336 1536 ProSitePatterns DNA polymerase family B signature. 1059 1067 IPR017964 GO:0000166|GO:0003676
Pste1g02336 1536 Gene3D DNA Polymerase alpha, zinc finger 1331 1521 IPR038256 -
Pste1g02336 1536 FunFam DNA polymerase 1330 1522 - -
Pste1g02336 1536 Gene3D Palm domain of DNA polymerase 891 1120 IPR023211 -
Pste1g02336 1536 MobiDBLite consensus disorder prediction 78 135 - -
Pste1g02336 1536 SUPERFAMILY DNA/RNA polymerases 895 1307 IPR043502 -
Pste1g02336 1536 Gene3D - 1135 1320 IPR042087 -
Pste1g02336 1536 Pfam DNA polymerase family B 822 1291 IPR006134 GO:0000166|GO:0003677
Pste1g02336 1536 FunFam DNA polymerase 962 1018 - -
Pste1g02336 1536 Gene3D - 390 516 - -
Pste1g02336 1536 Gene3D - 563 877 IPR036397 GO:0003676
Pste1g02336 1536 MobiDBLite consensus disorder prediction 102 123 - -
Pste1g02336 1536 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Pste1g02336 1536 Coils Coil 1071 1091 - -
Pste1g02336 1536 SMART polmehr3 563 1071 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pste1g02336 1536 SUPERFAMILY Ribonuclease H-like 344 851 IPR012337 -
Pste1g02336 1536 NCBIfam DNA polymerase (pol2) 51 1289 - -
Pste1g02336 1536 CDD POLBc_alpha 897 1307 IPR045846 GO:0003887|GO:1902975
Pste1g02336 1536 Gene3D - 350 549 - -
Pste1g02336 1536 PRINTS DNA-directed DNA-polymerase family B signature 1057 1065 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pste1g02336 1536 PRINTS DNA-directed DNA-polymerase family B signature 1004 1016 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pste1g02336 1536 PRINTS DNA-directed DNA-polymerase family B signature 921 934 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pste1g02336 1536 FunFam DNA polymerase 1135 1321 - -
Pste1g02336 1536 Coils Coil 425 445 - -
Pste1g02336 1536 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1534 - -
Pste1g02336 1536 MobiDBLite consensus disorder prediction 1 50 - -
Pste1g02336 1536 FunFam DNA polymerase 563 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02336 Pste-Chr1 8070321 8083181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02336 2 1534 Core DNA Replication Machinery Family AT5G67100 59.589 0.0 1789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02336 1 8070321 8083181 Pste1g02336 1 8070321 8083181 ECH