Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02332 TATTTTGAAGGGTTAGAGGGTGAGAACAAGAATGAAGCGTGCAGAGTGGGGAAGTTATTAGCAGAGAGGTTGAAGTGGGAAGTGAGGGAAGGCGCGTGAGTGTGAGTGAATTGTGATCGCCCACAATTCCCCATATCATGTCATGTTCATGTCCTTCTTTCTTTACCTTTTCCTTTTCCACAGGTTTCTGAAAGTGGTTGCATTGCCATTTACTTTCTTTCTCAACCCCAACCCTTTCCTTTCTGCAACCACTCGCATTCTTCTAAGTTCGAACACACACAGTTGCGGACATGGGTGACATGTACCACTTTGACAATAACCTCTCTTCGCAAGACGAAATCTCACTTTTTCTGCGTCAGATTCTGCTCCGTTCATCCTCTTCTTCCCACTCCATGCCTGGATCCTCCAACTCTACTCACCAAAACGTAAATGCGCACCCTTCTTTCGCAGCGCTGCAGCTCCAAGATGGGAAGATCTCCACCCTTGATTCCACCGCTTCTTTTGTCTCAGCTTCTGCCACTTGCAGTTACATCAAGCCTCACCCTGCTTCTGCTGCTAATGTGTCTTCTTCTTCTGTTGGAGTCAGTGAGAACGAAAATGATGACTATGACTGTGAAAGTGAGGAGGGGGTCGAAGCTTTGGCCGAAGAAGTTCCAACAAAGCCTGCTCCTTCTAGGAGTTCGTCTAAAAGATCAAGAGCTGCAGAAGTTCATAATTTGTCTGAGAAGCGGAGAAGGAGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAATCTTATTCCAAATTCTAACAAGACAGATAAGGCTTCAATGCTCGATGAGGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGGTCTGTATCTCTTTTACATGCAGCATCGTCTTCTTTAATTGGCTTTTGAAGGTAGATAGTCCTGAACTTCATGAGATCTTCTTGACAATATTTCAGATGCTGTCAATGAGAAACGGGTTGAGTTTGCATCCTATGTGCTTTCCTGAAGGCTTGCAGCCTCTGCAGTTGTCTCAGATAAGTATGGAATTAAGTGAAAGAAACAGGTCTAGTACCCATTTAAACATGACAGCTACTCTGCCTCTGCACCAAGACAACCCCTTGCTCTATGCATCTAATCTACCTAATAAACACACACTGCGAAATCAGTCATCAGCTTCCTATCCTCCATACATTAACAACTCAGAAACTTCTTTCGGTCTGGAATGCCGAATCCAACCAGATATAAAACCTCTTCAACACGAAGGAGGATCTTCTGAGCCTATATGCGGGGAGGACATTTTGCAGTACCAGCAATCAAATGCTATCCATTCAGATGCCAATACATTAGGTGGTTCTCAAGTCAAAGAATTCGAGTCAGGCACGAAAGTATCACTCTCTTTTGACACGCAAACACGTGAAGTTAAGGAAAACAACACTATAAAACCATGCATTGGTGGAAGAGATCGTTCAGGGGTTATCCTAAGAAATAGGGAGGCCAACATTGTTGTTACATCACAGTTGAGTAGGTAATTGGTAAGTATAAGAAGCATATATATGATGATATGTATGCTGATGCATGCAACATGTCTTCAAAAGCTTCTCACCAGACTGCAGTGGGAGAAAGTGGTGGCAAAGGCAACTCAAAGACCGAAAAATAAGAGATTTTTGAAGTTTACCAGTCTTGAAATGCAATGCAATGCTTTTTGAATTTTGGTTTCGGCGTAAAAGCAGGAATCCGAATCCCTTGAGCATTTTGTGTTGTTCTCAAAAAGTCTCCTCTGGCCTACGTGACGTGGGGAGCAGAAATTTATTCGTAGCTTATCGTGTTGATAAATTATGTATGTAATGTATCCATTGCAGAGAGAACTGCCAATTGTTGTACGGAATATATAACGACTGTAAAATCTCCTATGATGATTGCACTTCACGATAAAACTATTTTCACTTTTTAAAGTTTTTTGTGCGTCATTTTCTGAACTGGACACAACGTTACCAAGCTTGGCAGGGGGATTTCTATTTGTCCCATACATAATTTTATTGTCCA 2043 0.4224 MGDMYHFDNNLSSQDEISLFLRQILLRSSSSSHSMPGSSNSTHQNVNAHPSFAALQLQDGKISTLDSTASFVSASATCSYIKPHPASAANVSSSSVGVSENENDDYDCESEEGVEALAEEVPTKPAPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQVCISFTCSIVFFNWLLKVDSPELHEIFLTIFQMLSMRNGLSLHPMCFPEGLQPLQLSQISMELSERNRSSTHLNMTATLPLHQDNPLLYASNLPNKHTLRNQSSASYPPYINNSETSFGLECRIQPDIKPLQHEGGSSEPICGEDILQYQQSNAIHSDANTLGGSQVKEFESGTKVSLSFDTQTREVKENNTIKPCIGGRDRSGVILRNREANIVVTSQLSR 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02332 412 MobiDBLite consensus disorder prediction 86 147 - -
Pste1g02332 412 SMART finulus 142 191 IPR011598 GO:0046983
Pste1g02332 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 194 IPR036638 GO:0046983
Pste1g02332 412 Gene3D - 131 192 IPR036638 GO:0046983
Pste1g02332 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Pste1g02332 412 FunFam Basic helix-loop-helix transcription factor 131 194 - -
Pste1g02332 412 Pfam Helix-loop-helix DNA-binding domain 140 186 IPR011598 GO:0046983
Pste1g02332 412 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 342 IPR031066 -
Pste1g02332 412 MobiDBLite consensus disorder prediction 86 101 - -
Pste1g02332 412 MobiDBLite consensus disorder prediction 102 116 - -
Pste1g02332 412 CDD bHLH_AtPIF_like 137 191 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02332 Pste-Chr1 8052395 8056225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02332 5 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 39.267 1.38e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g02332 HLH 4.9e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02332 1 8052395 8056225 Pste1g02332 1 8052395 8056225 ECH