Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02289 ATGGACGGTGAAGGGAGAACACAAGCCCGAGAGAGAGAACCCACCACGAAGAGAACCCTCGCTGACGCTGCAGAGAGAAGATACAAAGGAATTAGGATGAGGAAGTGGGGTAAGTGGGTCGCTGAAATTAGGGAACCCAATAAGCGTTCAAGGATTTGGTTGGGTTCCTATTCTACCCCCGTCGCAGCCGCACGTGCCTACGACACCGCCGTCTTTTATCTCCGGGGACCCTCCGCCCGCCTCAACTTCCCCGAGCTTCTCGTCGGTGAGGGCCCCTCCCTCGTCGCCGGCTGCGACATGTCAGCAGCTACTATCCGGAAGAAGGCCACCGAGGTCGGTGCTAGAGTCGACGCTCTCCAGGCAACCCTTCACCACCATCACCACCACCACCGCCATGTGGCTCCTCCGCTTCCCGACCTTCTCTCCGCCGCTGGTGGTTCCGGGGATTTCGCCAAGCAGGTTGACCTCAATAAGATGCCCGAACCCGAGACTTCTGACGCTGAGTGGGACGTCAATTGA 519 0.5896 MDGEGRTQAREREPTTKRTLADAAERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLVGEGPSLVAGCDMSAATIRKKATEVGARVDALQATLHHHHHHHRHVAPPLPDLLSAAGGSGDFAKQVDLNKMPEPETSDAEWDVN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02289 172 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Pste1g02289 172 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Pste1g02289 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 167 - -
Pste1g02289 172 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Pste1g02289 172 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Pste1g02289 172 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Pste1g02289 172 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Pste1g02289 172 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Pste1g02289 172 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Pste1g02289 172 CDD AP2 27 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02289 Pste-Chr1 7854035 7854553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02289 25 170 AP2-EREBP Transcription Factor Family AT5G67190 57.485 5.92e-57 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste1g02289 AP2 1.2e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02289 1 7854035 7854553 Pste1g02289 1 7854035 7854553 ECH
Pste1g02289 1 7854035 7854553 Pste7g01090 7 10024236 10024709 PCT