Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02268 ATGAAGGGCCAGGAGCGTCGACCACCGCCCCGTTTCATGGCGGGTGGCAGTGGGTTCAAATCAAAATCGGCGTCTCTTCTCTTCTCTTGCGGTCAGCGGTCAACACTCCTTGTTCACGCTCCCTTAAATTCATCCACCTTTCTTAGTTCTCACATACGCACTCTTTCTCTCTCAAACATGAATACGGACACGCAACCCGGAACGACGTCGTATTGGTGCCACAACTGCACCCGTTTCGTGCACCTCTTCGGGCAAGACGCCATCCTTTGCCCCCACTGCCAGAGCGGCTTCGTCGAAGAGATCCGCGCCGACGCCTCACGTCTCAGCCCCTTCCCCGACGACCCTCTTTCTCTCCGCCGACAGGGCTTCCGCCGCCGCCGCCGAGATGCCTCCGGCAACCGCTCCCCCTTCAACCCCGTCATCGTCCTCCGCGGTCCCGGCGACGACTCCGCTGCCGCCGACCACGACAGCGCCAGCACCTTCGAGCTCTTCTATGACGACGGCGACGGCACCGGCCTCCGCCCACTCCCGCCCGCCATGTCGGAATTCCTCCTCGGCTCCGGCTTCGACAGGCTCCTCGAGCAGTTCGCGCAGATCGAGATGAACGGATTCGGAAGGCCCGAGAATCCGCCCGCGTCTAAGGCGGCGATCGAGTCCATGCCCACCATCCAGATCGGAGAGGCGCACGTTGAAACTGAGGCGCACTGCGCCGTGTGCAAAGAAGCGTTCGAGCTCCACGCGGAGGCGCGTGAGTTACCGTGCAAGCACATTTACCACTCCGATTGCATCCTCCCGTGGCTCTCCATGAGGAACTCCTGCCCGGTCTGCCGTCACGAGCTTCCTTCCGATTTGGAAGCTAGGGTTCCCAGTCAGATCGACGAGGATGCGATAGGGTTAACGATTTGGAGGCTGCCTGGCGGAGGATTCGCCGTCGGGCGATTCTCGGGAGGCCGGAGAACCGCCGAGAATCATTTCCCGGTGGTTTACACGGAGATGGACGGTGGGCTGAACACAAACGGAGCTCCGAGAAGAGTTTCTCGGTCGGTTAGAAGCAATAGGGTTAGGGAAAGTCGAGGGTTTGGTAGAGTTATTCGCAATTTCTTTTCATTCTTTGGACGAATTGGTTCTAGGAACTCTTCTTCTTCTTCGTCTTTGTCATTTTCCGAACATGGGTCTGTGAGTAGAAGCCGTAGTCAAGTGAGTTCAGTGGTCAGTAGAAGCTCGCGGAGACATAGCAGGAGTTGGGTTTTGGATGATTAA 1260 0.5833 MKGQERRPPPRFMAGGSGFKSKSASLLFSCGQRSTLLVHAPLNSSTFLSSHIRTLSLSNMNTDTQPGTTSYWCHNCTRFVHLFGQDAILCPHCQSGFVEEIRADASRLSPFPDDPLSLRRQGFRRRRRDASGNRSPFNPVIVLRGPGDDSAAADHDSASTFELFYDDGDGTGLRPLPPAMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTIQIGEAHVETEAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLEARVPSQIDEDAIGLTIWRLPGGGFAVGRFSGGRRTAENHFPVVYTEMDGGLNTNGAPRRVSRSVRSNRVRESRGFGRVIRNFFSFFGRIGSRNSSSSSSLSFSEHGSVSRSRSQVSSVVSRSSRRHSRSWVLDD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02268 419 ProSiteProfiles Zinc finger RING-type profile. 236 277 IPR001841 -
Pste1g02268 419 Pfam zinc-ribbon 69 101 IPR039525 GO:0061630
Pste1g02268 419 SMART ring_2 236 276 IPR001841 -
Pste1g02268 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 283 IPR013083 -
Pste1g02268 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 281 - -
Pste1g02268 419 Pfam Protein of unknown function (DUF1117) 297 409 IPR010543 -
Pste1g02268 419 SUPERFAMILY RING/U-box 216 283 - -
Pste1g02268 419 MobiDBLite consensus disorder prediction 398 419 - -
Pste1g02268 419 FunFam E3 ubiquitin-protein ligase RING1-like 198 283 - -
Pste1g02268 419 Pfam Ring finger domain 235 277 IPR001841 -
Pste1g02268 419 CDD RING-H2_RNF126-like 236 277 - -
Pste1g02268 419 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02268 Pste-Chr1 7695219 7696609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02268 175 283 C3H Transcription Factor Family AT5G01980 46.789 1.01e-27 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03367 3 26499646 26500590 Pste1g02268 1 7695219 7696609 PCT