Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02258 AGAAAAAGGAAAATACAAATAAAACAAGTTTGGTTTGGCTTTCTTCCTATCATATTTAATACTCCTCTAAATGGAACAAAACCCTAAGGGTTCTTGTAAGAACCAATCGCCGCCAGATTGATCTCTTACTATTTTCCTTTTTGATCTAAGTGCACCATTCTTCACTCCCTGCTTTCTCTTCTCTCGGGGTTCTTTCCAACCTTAAATTTTATTCTTGTATATACATTATTCCGTCGGAAAACATGTACAAGGAATTTCTTGTCTATAATTATGGAGACCAATTTTGACAATATAGAGTGAATTTCACAATCTTGTTTTATATTTACTTCTTCGGGCGGTTTTGTTTCAGCTTCAGAAATGACTTCGGTGCAGGTTTTACAAAGAAAGCTTAATTTTTGTTTTTCTTTTTTCCAGTAACTGCAAGCTAGAATTTTTCTGAAGTTGCTAACATGGGGTGCGGCGGTTTAGGCTCTGGGATGGGAAAAGTTTGAGTTTTGGGGTTGTTTTCTGGGTTAGGGTTTGATTTTCTGGTGATGGGTAGTGGTATGCTTTAGCTATATGAGGTTGATGATTAGAGGGTGGTGATCAAATTGAGATTTTGAAAATGTTGTCTGAATTGGGAAGAAGACCGATGCTTGGGAGTAACGATGGTTCTTTTGGTGATGAATTGGAGAAGGAGATAGGGATGTTACTTCGTGAGCAACGCAGACAAGAGGCTGATGATCATGAGCGAGAGCTTAATATTTTTAGGAGTGGATCAGCGCCTCCAACTGTTGAGGGTTCTTTGAATGCAGTTGGAGGGTTGTTTGGTGGTGTTGGTGCTACTGCTGCCTTTCCGGAGTTTCAAGGGACTAAAGACGTGAATGGGATTGCTTCTGAGGAAGAACTTAGGTCTGATCCTGCTTATATTTCATATTACTATTCCAACGTGAATATGAATCCTAGGCTACCACCTCCTTTGTTGTCAAAGGAAGATTGGAGGTTTCAACAAAGACTTAAAGGTGGAGCTTCGGTTCTGGGTGGAATTGGAGATAGGAGGAAAGTGAACAGGATTGATGATAATGATGGAAAATCGCTTTTCTCTACTCCTCCAGGCTTTAACATGAGGAAACAAGAGAGTGAGGTGGATAATGAAAAAACAAGAGGTTCGGCTGAGTGGGGCGGTGATGGATTGATTGGTTTGCCTGGACTAGGGCTGAGCAAACAAAAGAGCTTTGCAGAAATTTTTCAGGATGATTTGGGGCATAATTCCTCTATTGCATGCCTTCCTTCTCGTCCAGCCAGTCGTAATGCATTTGATGACAATGATATCATTAGTTCCGCTGAAGCTGAGTTGGCTCATGTACGCCGTGAGTCCGTGCACACAGATGTGTTGAGGTCAGGGTCAAATGTTCAAGGCTTATCTGCAGCCCAAAATATTGGCCCAGCAGCTTCATATTCTTATGCTGCTGCAGTAGGATCTTCCTTGTCCAGAAGCAGTACTCCTGATCCGCAACTTATTGCTAGGGCTCCCAGTCCCTGCATCACACCTATAGGTGGTGGCAGAGCCATTGCTTCTGACAAGAGAGCTATTGCCAGTCCAGATGCATTTAATGGTGTTTCATCAGGCATCAAGGAGTCAGCAGATCTTGCGGCTGCATTGTCAATGATGACCTTGTCAGCAGATGATGTATTAGATGATGAAAACCATTTGCCATCGCAGGTTGAATCAGATGTTGATAATCACCAGAGATACCTTTTTGGTAGGCAAGGTGGTCAAGATCATAGGAAACAACATGCTTATTTAAAGAAATCTGAATCAGCACACTTGCAAAATTCAAGTAAGAGCAGAAGTGGATCAGATCTCAACAATCCACCTTTGGATAGGCCAGTTCAGTTACAAAAGTCTACTGTTCCTTCCAATAACTCATATTTTAAAGGATCACCTACCTCCCATTTTAGTAGAGGAGGTAGTTTGCCACCTCAATTCCAGCCTTTAGATGCTACAAATTCATCATTTAATAATTATGGTCTGAGTGGATATGCTGGAAATCCAGCATTGACATCCTTTATGACTAACCAACTTGGCACTGGTAATCTGCCTCCCTTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCATCCCCTGGAATGGATTCGAGAATTCTTGCAGGTGGTCTGGCTTCTGGAGCTGCTGCTCCATCTGATGTGCATAATCTTGGTAGGATGGGAAATCAAATTCCAGGCAGTGCTCTTCAGGCTCCTTTTGTTGATCCCATGTATCTTCAGTACCTGAGGACATCTGAGTACGCAGCACAACTTGCTGCTCTTAATGACCCCTCTGTCGATAGGAATCACTTAGGCAATTCATACATGAATTTACTTGAGATTCAGAAAGCTTATCTTGGGTCTATCCTCTCACCTCAGAAATCCCAATATAATGTATCGCTTGGTGGTAAATCAGGCAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGTCGGGTTGTCTTATCCGGGAAGTCCAATGGCAAACTCTGTTGTATCCACTTCTCCTGTTGGATCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCGCTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTGATGGGACCTTGGCATGTAGATACTGGAAACATTGATGAAAATTTTGCTTCTTCGCTGTTGGAAGAGTTCAAAAGCAACAAAACAAAGTGTTTTGAGCTGTCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAGTATGGGAGCCGATTTATTCAACAGAAGCTTGAAACAGCTACTACAGAAGAAAAAAGCATGGTTTATCAGGAAATCATGCCTCATGCTCTTGCTTTGATGACTGATGTGTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGAATTGCATCCCAGAGAAGAGAATTAGCCAACAAACTTCTTGGTCATGTTCTAACACTTAGCCTTCAAATGTATGGTTGTCGGGTCATCCAGAAGGCCATTGAAGTTGTTGATCCTGATCAGAAGATAGAGATGGTTCAGGAGCTTGATGGTAATGTCATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCAATCCACTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAAAGAGTACTGGAGCACTGCAAAGATCCAACAACACAACAGAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGTTAGCTCAAGATCAGTATGGCAACTACGTTGTTCAGCATGTGCTGGAACACGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCTGGGAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTGAGTGAGATGCTTGGCACCACTGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAGACTTGTGATGACCAACAACGCGAGCTGATTCTTTCTCGAATTAAGGTTCATTTGAATGCGTTGAAAAAGTACACCTATGGAAAGCACATTGTCGCACGTGTAGAAAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAGTCTCCTCCTCAACTTGCTTAGGTGGCTTAGAAATATAATCAATCTTGTACAGCTAACTGAGGCTAGTGTGAGCTGCTTGTTCATCCTCTTTCCTTCCAAATCAAGAGGTTATGTTTGCCTATCTGTGAAGATGGGTTGTAGCCAATTGGAATAAAGTTGTCGGTTGTACTGCAGAATTGTACATTTTGTAGCTTTAAGTTTATACAAAGAATTTAAGCGAGATGAGGCTCAGATGTTTTAATGCACCTGGTGCCCCTGCAGAGGAGATAAAATGAAATGACTATACAAGCCTTTTTATGGTGTAAAGATTATAAAATGGTGAGGTAGTTTATAAGTTGACGTGACTGTACAAAATGATGGCATGTGGAGACCTGTTCTTGTTTAGACGAGGGCAGTTTTATCTTTTCATCTTTTATCTTGTATACTTATTGACCTGGCTTCCCCTTTCAAGAGTATAATTTTTGTTAGAAATGTTAGTTTTTTTTTTTCTCTAAT 4213 0.4137 MLSELGRRPMLGSNDGSFGDELEKEIGMLLREQRRQEADDHERELNIFRSGSAPPTVEGSLNAVGGLFGGVGATAAFPEFQGTKDVNGIASEEELRSDPAYISYYYSNVNMNPRLPPPLLSKEDWRFQQRLKGGASVLGGIGDRRKVNRIDDNDGKSLFSTPPGFNMRKQESEVDNEKTRGSAEWGGDGLIGLPGLGLSKQKSFAEIFQDDLGHNSSIACLPSRPASRNAFDDNDIISSAEAELAHVRRESVHTDVLRSGSNVQGLSAAQNIGPAASYSYAAAVGSSLSRSSTPDPQLIARAPSPCITPIGGGRAIASDKRAIASPDAFNGVSSGIKESADLAAALSMMTLSADDVLDDENHLPSQVESDVDNHQRYLFGRQGGQDHRKQHAYLKKSESAHLQNSSKSRSGSDLNNPPLDRPVQLQKSTVPSNNSYFKGSPTSHFSRGGSLPPQFQPLDATNSSFNNYGLSGYAGNPALTSFMTNQLGTGNLPPLFENVAAASAMASPGMDSRILAGGLASGAAAPSDVHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEYAAQLAALNDPSVDRNHLGNSYMNLLEIQKAYLGSILSPQKSQYNVSLGGKSGSSTPHGYYGNPAYGVGLSYPGSPMANSVVSTSPVGSGSPVRHNELNMRFASGMRNLAGVMGPWHVDTGNIDENFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKSMVYQEIMPHALALMTDVFGNYVVQKFFEHGIASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDPDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPPQLA 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02258 1044 CDD Pumilio 704 1024 IPR033712 GO:0003723
Pste1g02258 1044 ProSiteProfiles Pumilio RNA-binding repeat profile. 961 1002 IPR001313 GO:0003723
Pste1g02258 1044 MobiDBLite consensus disorder prediction 395 458 - -
Pste1g02258 1044 SUPERFAMILY ARM repeat 691 1025 IPR016024 -
Pste1g02258 1044 ProSiteProfiles Pumilio RNA-binding repeat profile. 852 888 IPR001313 GO:0003723
Pste1g02258 1044 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 101 1027 - -
Pste1g02258 1044 Pfam Nucleic acid binding protein NABP 301 707 IPR012940 -
Pste1g02258 1044 Pfam Pumilio-family RNA binding repeat 930 963 IPR001313 GO:0003723
Pste1g02258 1044 Pfam Pumilio-family RNA binding repeat 784 817 IPR001313 GO:0003723
Pste1g02258 1044 Pfam Pumilio-family RNA binding repeat 748 781 IPR001313 GO:0003723
Pste1g02258 1044 Pfam Pumilio-family RNA binding repeat 856 891 IPR001313 GO:0003723
Pste1g02258 1044 Pfam Pumilio-family RNA binding repeat 895 926 IPR001313 GO:0003723
Pste1g02258 1044 Pfam Pumilio-family RNA binding repeat 827 850 IPR001313 GO:0003723
Pste1g02258 1044 Pfam Pumilio-family RNA binding repeat 975 1004 IPR001313 GO:0003723
Pste1g02258 1044 Pfam Pumilio-family RNA binding repeat 712 746 IPR001313 GO:0003723
Pste1g02258 1044 MobiDBLite consensus disorder prediction 397 458 - -
Pste1g02258 1044 FunFam Pumilio homolog 1 isoform 2 687 1034 - -
Pste1g02258 1044 Gene3D - 688 1034 IPR011989 -
Pste1g02258 1044 ProSiteProfiles Pumilio RNA-binding repeat profile. 744 779 IPR001313 GO:0003723
Pste1g02258 1044 ProSiteProfiles Pumilio RNA-binding repeat profile. 816 851 IPR001313 GO:0003723
Pste1g02258 1044 SMART pum_5 889 924 IPR001313 GO:0003723
Pste1g02258 1044 SMART pum_5 816 851 IPR001313 GO:0003723
Pste1g02258 1044 SMART pum_5 744 779 IPR001313 GO:0003723
Pste1g02258 1044 SMART pum_5 925 960 IPR001313 GO:0003723
Pste1g02258 1044 SMART pum_5 967 1002 IPR001313 GO:0003723
Pste1g02258 1044 SMART pum_5 852 888 IPR001313 GO:0003723
Pste1g02258 1044 SMART pum_5 780 815 IPR001313 GO:0003723
Pste1g02258 1044 SMART pum_5 708 743 IPR001313 GO:0003723
Pste1g02258 1044 ProSiteProfiles Pumilio RNA-binding repeat profile. 889 924 IPR001313 GO:0003723
Pste1g02258 1044 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 688 1028 IPR033133 GO:0003723
Pste1g02258 1044 ProSiteProfiles Pumilio RNA-binding repeat profile. 708 743 IPR001313 GO:0003723
Pste1g02258 1044 ProSiteProfiles Pumilio RNA-binding repeat profile. 925 960 IPR001313 GO:0003723
Pste1g02258 1044 MobiDBLite consensus disorder prediction 152 186 - -
Pste1g02258 1044 ProSiteProfiles Pumilio RNA-binding repeat profile. 780 815 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02258 Pste-Chr1 7635937 7642765 Proximal