Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02251 CAAACCCCAGCTTCACATTGTTTTTCACCACTTCCATATATTACTTCACACCTTTTATGGGTACTTAACATTGCACACTTGCACTCACTGTGCTTTCCCATGACACCACTCTATACTTGTCCAGAAGGAGAAAGATCCATGAACTAACATTCCCACGCTCGCTTCACCTTATTTGCCACCCTTTTAGCCTCACTTCTTGTGTTGTTTTGGTCCCTTTTCCTTGTTTGGGAACTGGGGTTTTCTTGCTTCAAAAAGGGTAGAACTAATTGGTCATTATTAAGCTACTATAGATATAATATATATATTTTATAATTATTAAAGGAAAGAAAGAAAAAACTAAGATATGGGAAGGGGTAGGGTACAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAGGTGGGTTGCTCAAGAAAGCTCATGAGATCTCTGTACTCTGTGATGCTGAGGTAGCTTTGATTGTCTTCTCTCACAAAGGAAAGCTCTTTGAGTATGCTACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAAAGGTATGCTTATGCAGAGAGGCAGCTAGTAGCAAATGATTCCGAGACACAGGGAAATTGGACCATTGAATATACTAGGCTCAAGGCAAAGATTGACCTTTTGCAGAGAAACCATAGGCACTATATGGGAGAAGATTTGGCTTCAATGAGCCTCAAAGAGCTTCAGAGTTTGGAGCAGCAGTTAGATTCTGCTATCAAAAACATCCGTACAAGGAGGAATGATCTCATGTACGAGTCCATTTCTGAGCTTCAGAAAAAGGAGAAAAAGATACAAGAGCAGAATAGCCTCCTCGCAAAGAAGATCAAGGAGAAAGAGGAGGCAGTAGCACAACATGCTGCACAATGGGAACAGCAAAACTACAGGGTTGATACATCTTTCTTACCACAGCAACAACCCGTTCCCAGTTTGAACATAGGTGGCAATAATTACAATCAGGAAGCTGCACCAGAACTTGGAAGGAACGGTCTTGACCTTACCTTGGAACCATTGTATTGCCACCTTGGATGCTTCTGAAAACTTACTTGCTCTGGTTGATAATTAATATGATATAATTTCTAGCATATATGAACAACTATATGTAGCTAATATGTTTCAAAGCTTTATATATATGTACTTGGGTTTATGGTTTTTCCTACTTTCAAGACATTAATTTGAATTGCTTTGGTTGTAAACATGCTAAATTTGAAATCTAATGTGTATTCAAGGAAACATAC 1269 0.394 MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLASMSLKELQSLEQQLDSAIKNIRTRRNDLMYESISELQKKEKKIQEQNSLLAKKIKEKEEAVAQHAAQWEQQNYRVDTSFLPQQQPVPSLNIGGNNYNQEAAPELGRNGLDLTLEPLYCHLGCF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02251 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste1g02251 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste1g02251 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste1g02251 241 FunFam Floral homeotic protein APETALA 1 13 68 - -
Pste1g02251 241 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pste1g02251 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Pste1g02251 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste1g02251 241 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Pste1g02251 241 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Pste1g02251 241 Coils Coil 151 181 - -
Pste1g02251 241 Coils Coil 118 145 - -
Pste1g02251 241 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste1g02251 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste1g02251 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste1g02251 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste1g02251 241 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02251 Pste-Chr1 7609575 7614097 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02251 1 241 MADS-box Gene Family AT1G26310 62.891 4.41e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste1g02251 K-box 1e-29 No_clan