LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02244	AGCTATAAAGAAGGCAACGATATTATGGGTAGGGGAAAGGTGGAGCTAAAGAGGATTGAGAACAAGATAAACCGTCAAGTGACATTTGCAAAGAGGAGGAATGGTTTGCTCAAGAAAGCTTATGAACTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCCTAGCATGGCCAAGACACTTGAACGTTATCACAGATGTAGTTATGGAGCTTTGGAAGTACACCACCAACCTGAAATAGAGACACAGAGGCGCTATCAAGAGTACCTGAAGCTAAAATCTAAAGTGGAGGCACTACAGCAAACACAAAGAAACCTCCTTGGTGAAGAATTGGAGCACTTAGATGTTAAGGATCTTGAGCAGCTTGAACGTCAGCTGGATTCTTCATTGAAGCAAATAAGATCTAACAAG	453	0.4327	SYKEGNDIMGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPSMAKTLERYHRCSYGALEVHHQPEIETQRRYQEYLKLKSKVEALQQTQRNLLGEELEHLDVKDLEQLERQLDSSLKQIRSNK	151

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02244	151	Gene3D	-	21	121	IPR036879	GO:0003677\|GO:0046983
	Pste1g02244	151	SMART	madsneu2	9	68	IPR002100	GO:0003677\|GO:0046983
	Pste1g02244	151	FunFam	MADS-box transcription factor 1	21	109	-	-
	Pste1g02244	151	CDD	MADS_MEF2_like	10	86	IPR033896	GO:0000977\|GO:0045944
	Pste1g02244	151	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	18	65	IPR002100	GO:0003677\|GO:0046983
	Pste1g02244	151	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	11	150	-	-
	Pste1g02244	151	ProSitePatterns	MADS-box domain signature.	11	65	IPR002100	GO:0003677\|GO:0046983
	Pste1g02244	151	Coils	Coil	130	151	-	-
	Pste1g02244	151	ProSiteProfiles	MADS-box domain profile.	9	69	IPR002100	GO:0003677\|GO:0046983
	Pste1g02244	151	PRINTS	MADS domain signature	31	46	IPR002100	GO:0003677\|GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02244	Pste-Chr1	7571586	7578710	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02244	9	148	MADS-box Gene Family	AT3G02310	75.000	1.42e-72	214

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Pste1g02244		K-box	9.7e-18	No_clan

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