Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02244 AGCTATAAAGAAGGCAACGATATTATGGGTAGGGGAAAGGTGGAGCTAAAGAGGATTGAGAACAAGATAAACCGTCAAGTGACATTTGCAAAGAGGAGGAATGGTTTGCTCAAGAAAGCTTATGAACTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCCTAGCATGGCCAAGACACTTGAACGTTATCACAGATGTAGTTATGGAGCTTTGGAAGTACACCACCAACCTGAAATAGAGACACAGAGGCGCTATCAAGAGTACCTGAAGCTAAAATCTAAAGTGGAGGCACTACAGCAAACACAAAGAAACCTCCTTGGTGAAGAATTGGAGCACTTAGATGTTAAGGATCTTGAGCAGCTTGAACGTCAGCTGGATTCTTCATTGAAGCAAATAAGATCTAACAAG 453 0.4327 SYKEGNDIMGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPSMAKTLERYHRCSYGALEVHHQPEIETQRRYQEYLKLKSKVEALQQTQRNLLGEELEHLDVKDLEQLERQLDSSLKQIRSNK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02244 151 Gene3D - 21 121 IPR036879 GO:0003677|GO:0046983
Pste1g02244 151 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Pste1g02244 151 FunFam MADS-box transcription factor 1 21 109 - -
Pste1g02244 151 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977|GO:0045944
Pste1g02244 151 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Pste1g02244 151 PANTHER SERUM RESPONSE FACTOR HOMOLOG 11 150 - -
Pste1g02244 151 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Pste1g02244 151 Coils Coil 130 151 - -
Pste1g02244 151 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Pste1g02244 151 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Pste1g02244 151 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Pste1g02244 151 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Pste1g02244 151 ProSiteProfiles K-box domain profile. 96 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste1g02244 151 Pfam K-box region 95 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste1g02244 151 SUPERFAMILY SRF-like 10 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02244 Pste-Chr1 7571586 7578710 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02244 9 148 MADS-box Gene Family AT3G02310 75.000 1.42e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste1g02244 K-box 9.7e-18 No_clan