Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste1g02231 | ATGAGAAGCGCAAAACAACGCAACGGATCTATATTCGTGCTCCTCCACCCACTTCTCCCTCTTTTGTTTCACTGTGTTGTTGGTGAGACAGAGGACCTGCGGTTTGTGTTTGTGATGGAAGTGGCAGCTAGTGTTGGGGTAGCTCTATCACATGCTCATTTATGGATGCAGATGTCTGAGTCGTGGTCATCTCAGACTTCATCGAGGTCATACCGAGATGATGTAGGTTTTACTAGTGCACACCAATACACGAGCCCCCGAGACTTGAATGATGACGTCAACATGTGGCGTAGTGTTGGCCAATTGGGATGGACCCCCGTAAATGGGGCGCAAATGCTTAAAACTTATGTTACCTTTGGAAGAGCGAAATCTATTGGCCAAGATTTTCTCATCCTAGGTGAGATAATTCGTTTAAGAATGAAATATCATGACCAAGATGTTCTCATCTCAGAGAAGGAAATTGAAAAGGGCGGCGAAGCTAATAAGCGGAGTGGTGAAGAAAGAAAGTGTGATGGTTTGTTTGAGAAAGGTGGGAGTGAAATGAGGCATTTGAAGCAATTGGGAGAGGTGTTGGTGGCGGCATCAGTGAGCAACAGTCTATCCCAGTCGCAATCTGCAGCTCTGTCTCTGGATTGTTGGAATGGTGTCGGTCCCGGTGCCACTCCCACAACAACCCTCCCCTCCCTCCCCTCCCCAGCCGCATACTCCGTCGTCCTCCGCACCCTCTGCCAGCAGGGTTTATTCTCCGACATCCCCTCCCTCCTCCATTCCATGATGCAAGACGGCGTGGTTCTCCCTCCCCACTCCCTCAACCACCTCCTCCGCTCCTTCATCATCTCCTCTAACATCCCTTTAGCCCTCCAATTACTAGATTATGTGCAACACCTTCACCTTGATCCTACCCCTCTCTACAACTCTCTCCTTGCTGGCTTGCTTGCAAAAGACCAACTCCCTCTCGCCCTCTCCATTTTCTTCAAGCTCCTCAATGCGCTTCATCCCAATTCCATCGCTTCTAATCACTTGTTGGTTGCCCTCAGAAAAGCCGACATGAGGGTCGAGTTCAAGCAAGTGTTCCACGCTCTGAGGGACAAGAAAGGGTTTTCATTTGACACATGGGGCTACAATGTCTCTATCCACGCATTTGGTTCTTGGGGCGATCTGGCTACTTGCTTTTCCCTTTTCAAGGAGATGAAGTCCTCCGTTGCCCCTGATTTGTGCACCTACAACACTCTCATCTCCGCACTTTGCAGGATGGGTATGGTCGACGATGCCCTTCTTGTGTGGGACGACCTCAATGCCTCACCTCACCCACCTGATCGCTACACTTTCACCAACCTTATTCAAGCCTGTTCCAAGACTTATAGACTCCATCAGGCCATCACCCTTTTTAATCACATGCACACCAATGGATTCCTCCCCGATACACTTGTTTATAACTCTCTTCTCCATGCCCATTTTAAGGCCACCAAGGTTACACAAGCCTGCCACCTGTTTGAGAAAATGCTTCAAGAAGGGGTCAGGCCCTCCACCTCCACTTATAATATTCTCATTCACGGATTGTTTAGGAATGCCAGGTCCGAAGCTGCTTATACTATGTTTTCTGACCTCAAGAATAAGGGCCAATTTGTGGATGGGATTTCTTACAGCATTGTTGTGTTGCAGCTTTGTAAGGAGGGTCAACTCGAGGAGGCTCTGCAGTTAGTTGAAGAAATGGAAACCAGGGGTTTTGTTGTTGATCTTGTCACCATAACATCCCTCTTGATTACCATTCACAGACATGGTCGCTGGGATTGGACCGACCGCCTTATGAAGCATATCAGGGAAGGTCATCTGTTACCTTCTGTTCTTAAGTGGAAAACTGGAATGGAAGCTTCTATCAAGAACCCACCTGGAAAGAAAAAGGATTACCTGCCTATGTTCCCTTCAAAAGGCGATTTTAGTGACATCATGAGCTTTATAAACTATGCCCAAGATACCACCAACATTGATAATGCAGAGGAAACTTCCTGCAATGAAATTGACGAGTGGTCATCATCGCCACACATGGATAAATTGGCCAATCAAGTGGCCTCCACTGGCTATTCTTCCCAGCTGTTTACTCCTTCCCGCGGACAAAGAGTTCAAGAAAAAGGTCCAGATTCTTTTGATGTTGATATGGTGAATACTTTCTTATCTATATTTCTGGCCAAGGGAAAGTTGAGCTTGGCTTGCAAATTGTTTGAGATTTTCAGTGACGCTGGTGTGGATCCTGTTAGTTATACTTATAATTCTATCATGAGCTCTTTTGTCAAAAAGGGCTATTTTGCTGAGGCTTGGGCAATTCTAACTGAAATGGGAGAAAAATTTTGCCCAGCTGATATAGCCACGTACAATATGATAATTCAAGGTTTAGGAAAGATGGGAAGAGCTGATCTAGCCAGTGCTGTTCTTGATAGGCTACTTAAGCAGGGTGGTTATCTTGACATAGTTATGTATAATACTCTCATCAATGCTTTGGGGAAGGCAGGCCGAATTGATGAGGTGAATAAGCTCTTTGAGCAAATGAGGAGCAGTGGGATAAATCCTGATGTTGTTACTTATAATACATTGATTGAAGTTCACAGTAAGGCAGGGCGATTGAAGGATGCTTATAAGTTCTTAAAAATGATGCTGGATGCTGGATGCAGCCCTAATCATGTTACAGACACTACTTTAGATTATCTAGGGAGGGAACTTGATAAATTGAGATATCAAAGAGCATCAATTTTGACTGAAAAAGATGATCCTTCTTGA | 2772 | 0.4563 | MRSAKQRNGSIFVLLHPLLPLLFHCVVGETEDLRFVFVMEVAASVGVALSHAHLWMQMSESWSSQTSSRSYRDDVGFTSAHQYTSPRDLNDDVNMWRSVGQLGWTPVNGAQMLKTYVTFGRAKSIGQDFLILGEIIRLRMKYHDQDVLISEKEIEKGGEANKRSGEERKCDGLFEKGGSEMRHLKQLGEVLVAASVSNSLSQSQSAALSLDCWNGVGPGATPTTTLPSLPSPAAYSVVLRTLCQQGLFSDIPSLLHSMMQDGVVLPPHSLNHLLRSFIISSNIPLALQLLDYVQHLHLDPTPLYNSLLAGLLAKDQLPLALSIFFKLLNALHPNSIASNHLLVALRKADMRVEFKQVFHALRDKKGFSFDTWGYNVSIHAFGSWGDLATCFSLFKEMKSSVAPDLCTYNTLISALCRMGMVDDALLVWDDLNASPHPPDRYTFTNLIQACSKTYRLHQAITLFNHMHTNGFLPDTLVYNSLLHAHFKATKVTQACHLFEKMLQEGVRPSTSTYNILIHGLFRNARSEAAYTMFSDLKNKGQFVDGISYSIVVLQLCKEGQLEEALQLVEEMETRGFVVDLVTITSLLITIHRHGRWDWTDRLMKHIREGHLLPSVLKWKTGMEASIKNPPGKKKDYLPMFPSKGDFSDIMSFINYAQDTTNIDNAEETSCNEIDEWSSSPHMDKLANQVASTGYSSQLFTPSRGQRVQEKGPDSFDVDMVNTFLSIFLAKGKLSLACKLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFAEAWAILTEMGEKFCPADIATYNMIIQGLGKMGRADLASAVLDRLLKQGGYLDIVMYNTLINALGKAGRIDEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGRLKDAYKFLKMMLDAGCSPNHVTDTTLDYLGRELDKLRYQRASILTEKDDPS | 923 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste1g02231 | 923 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 439 | 473 | IPR002885 | - | |
| Pste1g02231 | 923 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 474 | 508 | IPR002885 | - | |
| Pste1g02231 | 923 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 856 | 890 | IPR002885 | - | |
| Pste1g02231 | 923 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 403 | 588 | - | - | |
| Pste1g02231 | 923 | SUPERFAMILY | TPR-like | 405 | 886 | IPR011990 | GO:0005515 | |
| Pste1g02231 | 923 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 509 | 543 | IPR002885 | - | |
| Pste1g02231 | 923 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 751 | 785 | IPR002885 | - | |
| Pste1g02231 | 923 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 786 | 820 | IPR002885 | - | |
| Pste1g02231 | 923 | Pfam | PPR repeat | 374 | 399 | IPR002885 | - | |
| Pste1g02231 | 923 | Pfam | PPR repeat | 234 | 263 | IPR002885 | - | |
| Pste1g02231 | 923 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 544 | 578 | IPR002885 | - | |
| Pste1g02231 | 923 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 821 | 855 | IPR002885 | - | |
| Pste1g02231 | 923 | Pfam | PPR repeat | 540 | 572 | IPR002885 | - | |
| Pste1g02231 | 923 | Gene3D | Tetratricopeptide repeat domain | 484 | 634 | IPR011990 | GO:0005515 | |
| Pste1g02231 | 923 | Gene3D | Tetratricopeptide repeat domain | 227 | 329 | IPR011990 | GO:0005515 | |
| Pste1g02231 | 923 | Gene3D | Tetratricopeptide repeat domain | 330 | 460 | IPR011990 | GO:0005515 | |
| Pste1g02231 | 923 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 231 | 265 | IPR002885 | - | |
| Pste1g02231 | 923 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 404 | 438 | IPR002885 | - | |
| Pste1g02231 | 923 | Gene3D | Tetratricopeptide repeat domain | 800 | 901 | IPR011990 | GO:0005515 | |
| Pste1g02231 | 923 | Gene3D | Tetratricopeptide repeat domain | 704 | 799 | IPR011990 | GO:0005515 | |
| Pste1g02231 | 923 | NCBIfam | pentatricopeptide repeat | 477 | 509 | IPR002885 | - | |
| Pste1g02231 | 923 | NCBIfam | pentatricopeptide repeat | 406 | 439 | IPR002885 | - | |
| Pste1g02231 | 923 | NCBIfam | pentatricopeptide repeat | 858 | 891 | IPR002885 | - | |
| Pste1g02231 | 923 | NCBIfam | pentatricopeptide repeat | 753 | 786 | IPR002885 | - | |
| Pste1g02231 | 923 | NCBIfam | pentatricopeptide repeat | 441 | 475 | IPR002885 | - | |
| Pste1g02231 | 923 | NCBIfam | pentatricopeptide repeat | 789 | 821 | IPR002885 | - | |
| Pste1g02231 | 923 | NCBIfam | pentatricopeptide repeat | 823 | 857 | IPR002885 | - | |
| Pste1g02231 | 923 | NCBIfam | pentatricopeptide repeat | 546 | 579 | IPR002885 | - | |
| Pste1g02231 | 923 | NCBIfam | pentatricopeptide repeat | 234 | 264 | IPR002885 | - | |
| Pste1g02231 | 923 | NCBIfam | pentatricopeptide repeat | 512 | 540 | IPR002885 | - | |
| Pste1g02231 | 923 | Pfam | PPR repeat family | 473 | 521 | IPR002885 | - | |
| Pste1g02231 | 923 | Pfam | PPR repeat family | 821 | 860 | IPR002885 | - | |
| Pste1g02231 | 923 | Pfam | PPR repeat family | 403 | 451 | IPR002885 | - | |
| Pste1g02231 | 923 | Pfam | PPR repeat family | 752 | 798 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste1g02231 | 716 | 906 | Glycosyltransferase | AT1G05670 | 34.375 | 1.22e-23 | 105 |