LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02228	ATGGGTCGTCGTAAGATTGAGATCACAGAGGTGAAGGATCGCAACACCAAGCAAGTAACATTCTCGAAGCGTCGAAAAGGTTTGTTCAAAAAGGCAAATGAATTATCCATTTTGTGTGGGGCAGAAGTTGCTATTGTTGTGTTCTCTCCAGGGAACAAACCTTACTCTTTTGGGCACCCAAGTGTTGACATTGTTGCAGATAAATTCCTTCAACAAGATCCCAAATCTAAAGTTGTTGAATCAAATAATGAAATTGATGACATGGATGCCCTCAATCAACAATTATCTGATGTTCAGGCTCAAATTTCTAAGGAACAAAAGAAGCTTGATGAACTTGATAGGAGATTCCAACAACAAAAAATTATCAAACTTTCTCAAAATCAAGAATCGCATGATTCGTTTTTACTATTCCAAAGTAAGGTGGATTCTTTAGTGGAGGACTATTTTGATGCAATTGAGGTTTCCGAATATATGTTGCTTCTTGCAAAAGAACCAGTAGTTGGAATAAATAAAAAAGTTACTAAGAAAAGCAGAAAGAATTGA	543	0.361	MGRRKIEITEVKDRNTKQVTFSKRRKGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVDIVADKFLQQDPKSKVVESNNEIDDMDALNQQLSDVQAQISKEQKKLDELDRRFQQQKIIKLSQNQESHDSFLLFQSKVDSLVEDYFDAIEVSEYMLLLAKEPVVGINKKVTKKSRKN	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02228	180	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Pste1g02228	180	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Pste1g02228	180	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Pste1g02228	180	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Pste1g02228	180	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Pste1g02228	180	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	12	57	IPR002100	GO:0003677\|GO:0046983
	Pste1g02228	180	PANTHER	MADS BOX PROTEIN	3	116	-	-
	Pste1g02228	180	Coils	Coil	81	115	-	-
	Pste1g02228	180	Gene3D	-	14	85	IPR036879	GO:0003677\|GO:0046983
	Pste1g02228	180	FunFam	Agamous-like MADS-box protein AGL62	13	79	-	-
	Pste1g02228	180	SUPERFAMILY	SRF-like	1	76	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02228	Pste-Chr1	7477359	7477901	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02228	1	163	Type I MADS-box Gene Family	AT2G34440	38.286	2.31e-33	115

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Pste1g02228		SRF-TF	6.3e-25	No_clan