Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02214 AGAAAATTGGCCATCAGTGAAACACACTGGGGTCAGGATCAGGCTAGGGTACAATGAGGAAGCCCGAGGTTTCTGGAAAAAGCAACTCCAACGTTAACAACAAGCTTAGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGCTGGAGCGATGTGGCCAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGTTGGATCAATTACTTGAGGCCTGATCTTAAACGAGGGGCATTCTCACCACAAGAGGAGGAACTCATCATCCATTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCTGGGCGAACTGACAATGAAATTAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTGAAGAACTTGTCATCCAACACCTCAATAAATGGCAGCGACTCCTCATATGAGCCTGACAAAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCGAAGATCAACATGCTGATTTTATGCCTATGTTCAATTCATCATCTCCATCACCATCCACGCATGCCACAGTTCTCAATTCCATAATTGACAGGTTACCTATGTTAGAGCATGGACTGAACATGTCAGCTTCTGGTGGATACTTCAACGGCACAGGGCCATGTTTATCATCACAAACTGGAGTTGACAACAAAGGTTTTTATTTGGAAAGTGGAGGGGTATTTGGAAGTGTAAATATGGCAGAAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACCTCTGAACATAACCTGAAACTGGATAGTATATGCAACGCTGATACTAACAATAGTTACTTTGATAACATAAACGACATCATCCTTAATAACAGCAACAATAAGAGAGCTGAAAATAGGGCTGCCGTGGAGAATTTATTTCAACAAGAGTTAACCCTGGGAGAGTGGGACTTGGAGGAGTTGATGAAAGATGTTTCATCGCATCTCTTTCTTGATTTTTCAAATATCCAATAAGTATTCTCTCTTTCTCTTTTCAAAGATCTTCTGAGGATCCCATTGGCTGCTACTACTCATTATTGGAATCATACCTCCAT 1111 0.4221 MRKPEVSGKSNSNVNNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSNTSINGSDSSYEPDKDLNMAGFTTSNTEDQHADFMPMFNSSSPSPSTHATVLNSIIDRLPMLEHGLNMSASGGYFNGTGPCLSSQTGVDNKGFYLESGGVFGSVNMAEGDMYVPPLESVSTTSEHNLKLDSICNADTNNSYFDNINDIILNNSNNKRAENRAAVENLFQQELTLGEWDLEELMKDVSSHLFLDFSNIQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02214 325 FunFam Transcription factor MYB46 74 143 - -
Pste1g02214 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Pste1g02214 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Pste1g02214 325 Gene3D - 74 144 - -
Pste1g02214 325 FunFam MYB transcription factor 17 73 - -
Pste1g02214 325 SMART sant 19 69 IPR001005 -
Pste1g02214 325 SMART sant 72 120 IPR001005 -
Pste1g02214 325 CDD SANT 75 115 IPR001005 -
Pste1g02214 325 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Pste1g02214 325 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Pste1g02214 325 Gene3D - 17 73 - -
Pste1g02214 325 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Pste1g02214 325 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Pste1g02214 325 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Pste1g02214 325 CDD SANT 23 67 IPR001005 -
Pste1g02214 325 PANTHER MYB DOMAIN PROTEIN 55 14 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02214 Pste-Chr1 7360110 7362165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02214 1 321 MYB Transcription Factor Family AT5G12870 44.099 4.04e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g02214 Myb_DNA-binding 9.3e-12 CL0123