Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02205 AGCCGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGGAGAGAGGAGGTTAGTTAGCGCGGCGGTGGAAGATGGTGTCGACAGCGATCGAAGAAGTGCGAACTCTGTGGATTGGTGATTTGCAGTACTGGGTGGACGAGTCGTATCTCTCACAGTGTTTCGCCCACAGCGGCGAAGTGGTTTCTATAAAAATAATCCGAAACAAGATGACGGGCCAGCCGGAGGGGTATGGGTTCGTGGAATTCGTTTCCCACGCCGCAGCCGAGGCCTTTCTGCGGACCTACAACGGCACTCAAATGCCCGGCACCGAACAGACCTTCAGGCTCAATTGGGCCTCTTTCGGCGACTCTGGGCCCGACCATTCCATCTTCGTCGGCGATCTCGCCCCCGACGTCACCGATTTCCTCCTCCAGGAGACTTTTCGCACCCATTATCCCTCCGTTAAAGGCGCCAAAGTCGTTACCGACCCCGCCACGGGCCGCTCCAAGGGATATGGCTTCGTTAAGTTCGCCGATGAGGTCCAGAGGAACCGCGCCATGACTGAAATGAACGGTGTTTATTGCTCCACTCGCCCTATGCGTATCAGCGCTGCTACGCCTAAGAAAAACGCTTCTTTTCAACACCAATATGCTCCCCCTAAAGCAATATATCAATTTCCTGCATACACTGCTCCGGTGAATACTGCTGCACCAGAAAATGATGTGAACAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTCACAGAGGAGGAGCTTAAGCAAACCTTCATGCAATTTGGAGATATTGCGTCTGTCAAAATTTATGCGGGCAAAGGATACGGTTATGTTCAGTTCGGAACTAGAGCATCTGCTGAAGATGCCATTCAGAGGATGCAAGGGAAGATATTAGGTCAACAAGTGATCCAAATTTCTTGGGGCACCACCACAACAGCTAGACAGGATGTACCTGGTGCCTGGGGTGCACAGATGGATCCAAGTCAATGGGGTGCCTACTATGGATATGGACAGGGTTACGAAGCATATGCTTATGGTGCTACTCATGATCCCTCTTTGTATGCTTATGGTGCTTATGCTGGTTATGCACAATACCCTCAACAGGTTGAAGGTGCTCAAGACATGTCAGCAGTGTCTATGCCTATGGAGGAGTTGTATGATCCCCTGGCAATGCCTGATGTCGATAAATTAAATGCTTCATATCTTTCAATACATGGAAGTGCCATTTTAGGGCGGTCCCTTTGGCAGAGAACTTCGCAATCTTGATGGCAAGCCTAGGATCTATTTGTATTGTATGGTCAATTTTAAGCACGAATGCTTCAAAATGTGGCGGTCTTACAATATTTTTGTTTGTTTCGAACATGAGTGGAATATCATGTTAATTAGATTAATGGTAGTGATTATGATGTTAAACAGAATATCAATGTTTTATTTTAGTTTAGGATTGGAGTTTTAACAGTAATTTTGTATTAAATTTAGATATGGTGTCATAATATTCAGAATTTGGACTATAGGCTTT 1516 0.4644 MVSTAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKMTGQPEGYGFVEFVSHAAAEAFLRTYNGTQMPGTEQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRTHYPSVKGAKVVTDPATGRSKGYGFVKFADEVQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQHQYAPPKAIYQFPAYTAPVNTAAPENDVNNTTVCIGNLDLNVTEEELKQTFMQFGDIASVKIYAGKGYGYVQFGTRASAEDAIQRMQGKILGQQVIQISWGTTTTARQDVPGAWGAQMDPSQWGAYYGYGQGYEAYAYGATHDPSLYAYGAYAGYAQYPQQVEGAQDMSAVSMPMEELYDPLAMPDVDKLNASYLSIHGSAILGRSLWQRTSQS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02205 397 CDD RRM1_SECp43_like 11 91 - -
Pste1g02205 397 FunFam polyadenylate-binding protein RBP45 197 293 - -
Pste1g02205 397 SUPERFAMILY RNA-binding domain, RBD 94 185 IPR035979 GO:0003676
Pste1g02205 397 SUPERFAMILY RNA-binding domain, RBD 194 315 IPR035979 GO:0003676
Pste1g02205 397 FunFam Polyadenylate-binding protein RBP47B 89 187 - -
Pste1g02205 397 SUPERFAMILY RNA-binding domain, RBD 5 78 IPR035979 GO:0003676
Pste1g02205 397 CDD RRM2_SECp43_like 96 175 - -
Pste1g02205 397 Gene3D - 9 89 IPR012677 -
Pste1g02205 397 SMART rrm1_1 11 86 IPR000504 GO:0003723
Pste1g02205 397 SMART rrm1_1 215 282 IPR000504 GO:0003723
Pste1g02205 397 SMART rrm1_1 98 172 IPR000504 GO:0003723
Pste1g02205 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 80 IPR000504 GO:0003723
Pste1g02205 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Pste1g02205 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Pste1g02205 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 286 IPR000504 GO:0003723
Pste1g02205 397 Gene3D - 199 294 IPR012677 -
Pste1g02205 397 Gene3D - 96 173 IPR012677 -
Pste1g02205 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 90 IPR000504 GO:0003723
Pste1g02205 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Pste1g02205 397 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 290 - -
Pste1g02205 397 FunFam Polyadenylate-binding protein RBP47B 9 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02205 Pste-Chr1 7312802 7316883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02205 9 304 Eukaryotic Initiation Factors Gene Family AT2G23350 26.214 3.43e-23 99.8