Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02200 TGCAACATTTTCCTCCCTCTGCCAAAGCTACTATTACTCCTCTTTCTTTCACCCCTTCTCCTCTCTAACCCTTTCGAAATATGAATCAGGAAGAGAAACTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGTTGGTATCCCATGCAAGAGGCTGCTAGACACTGTGACAGTGAAGTGCGGTCACTGCAGCAACCTCTCCTTTCTCAGCACCAGACCCCCCAATTCTCAAAACCAAAGCATTGATCACACCCTCAGTCTCCAGGGGTTTTACAGTAATGCCAAAAAGGGCCAAGCATCATCTTCATCTTCCTCCCCAACTACATCCAACGAGTCAGTGTCCCCAAAAGCAGCATCATTTGTTGTGAAACCACCTGAGAAAAAGCACCGTCTTCCATCAGCTTACAACCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCAAACCCTGAGATCCCACATCGAGAAGCATTCAGTGCTGCAGCAAAAAACTGGGCTAGGTTCATTCCAAATTCACCAACCAGTTCGGTTTCTGCAAGTAAAGTTAATGCTGATTGAGATGCTGTGGCATGATGGTTTGAAGAGAAGTGGAGCAACTTAACTTAGGTGTCAATTAGTTATAATATTAAACTATGTGTTGTTTAATTTCTCTATATCTTTCAATTTAATTTCCTTC 720 0.4458 MNQEEKLTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDHTLSLQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVSASKVNAD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02200 173 CDD HMG-box_SF 117 153 - -
Pste1g02200 173 SUPERFAMILY HMG-box 100 154 IPR036910 -
Pste1g02200 173 PANTHER PROTEIN YABBY 6-RELATED 14 163 IPR006780 GO:0007275
Pste1g02200 173 MobiDBLite consensus disorder prediction 82 103 - -
Pste1g02200 173 Pfam YABBY protein 14 156 IPR006780 GO:0007275
Pste1g02200 173 Gene3D High mobility group box domain 85 160 IPR036910 -
Pste1g02200 173 FunFam Protein CRABS CLAW 89 160 - -
Pste1g02200 173 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02200 Pste-Chr1 7289903 7292006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02200 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 65.116 4.37e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pste1g02200 YABBY 1.8e-56 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02200 1 7289903 7292006 Pste1g02200 1 7289903 7292006 ECH