Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02188 ATGATCAACACTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGACCTTGCTGCTTTAAACGAAATTCAGTCAAATGATTCAGATTATCTGTTCACAAACAGCAGTCTCGTAGCTTTGCAAAACCCAGTGGTGGACACACCTAGCAATGAGTATCAAGAGAATGCCAATAGTAATTTGCAATCATTGACATTGTCCATGGGAAGTGGTAAGGATTCAACATGCGAAACCAGTGGTGAAAATAGTACAAATACTGTTGAAGCTGCACCTAGAAGAACTTTGGATACATTCGGGCAGAGAACATCCATATATCGTGGAGTAACTCGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGACGTCAAGGTGGGTATGACAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCTGCACTGAAGTATTGGGGAACATCCACCACTACCAACTTTCCCATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAAGAATTTGTTGCCGCCATTAGAAGGAAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGCGGAGTTACAAGGCATCACCAACACGGGAGATGGCAAGCGAGGATTGGAAGAGTTGCAGGAAATAAAGATCTATACTTAGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTACGACATAGCAGCAATAAAGTTCAGAGGTCTGAACGCCGTAACGAACTTCGACATGAGCCGTTACGACGTGAAAGCTATTCTGGAAAGCAACACTCTCCCAATAGGAGGAGGTGCTGCAAAGCGTCTGAAAGAAGCTCAAGCACTAGAATCTTGTAGAAAACGAGAAGAGATGATTGCACTTGGCTCATCCACATTTCAATATGGGACCTCAAGCTCTTCTAGGCTACACGCTTATCCTCTAATGCAGCACCACCAGTTCGAGCAACCTCAGCCTCTGCTAACATTGCAAAACCATGACATTACATCTCACTTCTCTCACCAAGACCCTTTGCATCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGACTGGCGCTTCTTATCTTCAGAATAATGCTCCGTTCTACAACGGTTACCTTCACAACCACCCTGCATTGCTTCAGGGAATGATGAACATGGGGTCTTCTTCTTCTTCTTCTTCGGTGTTGGAGAATAATAATAATAATAATAACAACAACAACAATGTTGGCGGTTTTGTGGGAAGTGGGTTTGGCATGGGTTCAAATGCACCATCGGCTAATGCTGTGGGAACAGCGGAGGAACTAGGGTTGGTGAAGGTTGACTATGACATGCCGGCCGGAGGTTACGGTGGCTGGTCGGCGGCGGAGTCCATGCAGACGTCCAATGGTGGGGTGTTCACAATGTGGAATGATTGA 1482 0.4514 MINTHSSNEVPKVADFLGVSKSENQSDLAALNEIQSNDSDYLFTNSSLVALQNPVVDTPSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESCRKREEMIALGSSTFQYGTSSSSRLHAYPLMQHHQFEQPQPLLTLQNHDITSHFSHQDPLHQGYIQTQLQLHQQTGASYLQNNAPFYNGYLHNHPALLQGMMNMGSSSSSSSVLENNNNNNNNNNNVGGFVGSGFGMGSNAPSANAVGTAEELGLVKVDYDMPAGGYGGWSAAESMQTSNGGVFTMWND 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02188 493 CDD AP2 212 273 IPR001471 GO:0003700|GO:0006355
Pste1g02188 493 ProSiteProfiles AP2/ERF domain profile. 114 177 IPR001471 GO:0003700|GO:0006355
Pste1g02188 493 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Pste1g02188 493 PRINTS Ethylene responsive element binding protein signature 253 273 IPR001471 GO:0003700|GO:0006355
Pste1g02188 493 SMART rav1_2 114 183 IPR001471 GO:0003700|GO:0006355
Pste1g02188 493 SMART rav1_2 213 277 IPR001471 GO:0003700|GO:0006355
Pste1g02188 493 ProSiteProfiles AP2/ERF domain profile. 213 271 IPR001471 GO:0003700|GO:0006355
Pste1g02188 493 FunFam AP2-like ethylene-responsive transcription factor ANT 113 179 - -
Pste1g02188 493 SUPERFAMILY DNA-binding domain 113 179 IPR016177 GO:0003677
Pste1g02188 493 Gene3D AP2/ERF domain 213 273 IPR036955 GO:0003700|GO:0006355
Pste1g02188 493 Gene3D AP2/ERF domain 114 179 IPR036955 GO:0003700|GO:0006355
Pste1g02188 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 365 - -
Pste1g02188 493 Pfam AP2 domain 114 169 IPR001471 GO:0003700|GO:0006355
Pste1g02188 493 Pfam AP2 domain 214 263 IPR001471 GO:0003700|GO:0006355
Pste1g02188 493 CDD AP2 113 179 IPR001471 GO:0003700|GO:0006355
Pste1g02188 493 FunFam AP2-like ethylene-responsive transcription factor 212 273 - -
Pste1g02188 493 SUPERFAMILY DNA-binding domain 212 273 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02188 Pste-Chr1 7183988 7186430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02188 1 493 AP2-EREBP Transcription Factor Family AT3G20840 63.669 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pste1g02188 AP2 2.2e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02188 1 7183988 7186430 Pste1g02188 1 7183988 7186430 ECH