Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02175 GCCACGTTCATCTCCTATTTGGTTTCATCCCAAAATTGAGGGCATTCTAGTAAAACTGGAACTCAACACACACACCAAATCTGAGAGCTGGATTTGTGGCTCTGTTCACTTCTCATTGGCTGCACCTCCTCACAAACTACATCAAATGCTATTTTATAATCCTTTCTCTTCAACCTTCCCCATCTTCAGTCTCCACCACCACCCCACACAATCTTAAATCCAACCCAAAACACCACCACCAGGTACGTCTTATCTTTCTTGCTTCTTACTTCACTTTCTTTGCTTTTATCTGTACAACTTTCCTGTCTTGTCCCGCTCAGTTCACTGCTTCATTCACTCTCGGGAACACACAAATGGCTCCCCGTTAGTTTCCATCACTTTCCATGTTATTGTTATGTCTATGAGACTCATACAAACTACAACAACTCATGTTTTGTTTTTTCCTATTTTCTTTTAGTTATGCTTGTGTTGATCTCTCCCTGGTTTTGAGGCAACCCAATTCAAAGTTTAGAGTTGCAAGTTAAATTATCTAGATTCGGGGTTTGCTTTGTTGGTTTTAGATCTCTGGAATTGTTATGCTGAAAGCTGGACAAAGAATTTGCTTTTTCAGGAAAGAGAGGATTCCAAGAAGTTGGTGTGATCTGATGTGAGTGCTTAGAAGATAATCTCCGAGGAGAAAAAGGGGTAAAAGAAAAGGCTTTAATTTATTTGTTTTATGGAGTCAGATCTTCACCAGGACCCTCCCATGTTTTCGGATCACCAGCAGCAGCAGCAGATGAATTCAGGGTTGACACGGTACCGATCGGCACCAAGTTCATTTTTTTCGAGCATCATTGACAGTGAGTTCTATGAGCACGTTTTCAATCGTCCCTCAAGCCCCGAAACAGAGCGAATGTTGACACGTTTTGTGAATAGTCTCGGTGGGGGTGATGCTGATGGGGAGGATTCACTTGCTGCTTCCACTCAGAATCCCCCAACTCTAGTTGCAGTTAAAGAAGAGGTTAATCAACAACCTCGGGATATGCCATCCATGAATAATGAACCCCTTGTTCTACAACAGCAGCAGCAGCAGCAAAGTAATATCAGTAGTTATGGCTCTTCACCTCCTCACAATTTTTATCAAAACACTGGACGACCACCTTTGCCAAACCAGATGAAGACTGGTCGTGTAACTACCACTTCCGGTCTTATCAGGCATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAAATTGCTATGCTGCTGTAAGAGGCATGGGAACTATGGGAGCTGCTGCTAATAACACTAGTGAGGAAGCAAACTTTTCCCCTGCAACCAGGATGAAGAATGCACCAAACTACTCTTCGGGACTAATCCCATCAAGGGCTGAAATTGGAAACAAAAACAGTACACAGAATAATGCAGAAAAAGAAGGGTTTGCCGAAAGCCAGGCTAATGAATTTATCCCTGGTTTCCCCGTTGGTCCATGGGATGATTCTTCAATCATGTCTGACAATGTGACTGGTCTAAAGAGATTTCGGGATGATGATATAAAACCATTTTCCGGTCTAAATGCACCTGAAAGTCAGAATGAAACAGGAGGCCAACCTTCTGCAGCGTTGGCTCATCAGTTGAGTTTGCCAAATACTTCTGCAGAAATGGCTGCCATTGAGAAGTTTCTGCAGCTCTCAGATTCTGTTCCTTGCAAAATTCGAGCCAAGCGGGGATGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTACAAGATCTGGTACCGAACATGGATAAACAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAAGGAAGTTCAGACTCTTTCAGACAATCGGGCCAAGTGTACGTGTTCACACAAGCAGCAGCAATAACGGAAAAGAAGGAGGATACCCGCGTCATTCCGTGTACAGCTTAGTAATAATTTGGTCTAGAAACTAGCGCACCTTTCCGTAGGATAATTATGTAGCCACATCTTAAGCGAAATGGTGGCAAAATCCGCTTATTAAAGTTGACTTTATCATCAAAATTTGATGCCACATAACATATTGAAAGCATGGTGTACAAAATTTCCTGGTTTAAGTCTATATGCCTTTTACTCTTGGGGGCCCCCAATTTCAGGGGTAGGGGTGGAAATTGCATTTTTGCACCTTCATGTCATCACCAATAACCAATAACCAATAACCAATAACATGGTTAAAAAGAATTTCATCTCATGTATGGGTTTCATTTCACATTGAATGATACGGGGGACCGAAGCCGACATAGTTTTGTTGGTTATATTATATATACTTGTATCAG 2366 0.421 MESDLHQDPPMFSDHQQQQQMNSGLTRYRSAPSSFFSSIIDSEFYEHVFNRPSSPETERMLTRFVNSLGGGDADGEDSLAASTQNPPTLVAVKEEVNQQPRDMPSMNNEPLVLQQQQQQQSNISSYGSSPPHNFYQNTGRPPLPNQMKTGRVTTTSGLIRHGSSPAGLFSNINIENCYAAVRGMGTMGAAANNTSEEANFSPATRMKNAPNYSSGLIPSRAEIGNKNSTQNNAEKEGFAESQANEFIPGFPVGPWDDSSIMSDNVTGLKRFRDDDIKPFSGLNAPESQNETGGQPSAALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQKEVQTLSDNRAKCTCSHKQQQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02175 407 MobiDBLite consensus disorder prediction 100 150 - -
Pste1g02175 407 Gene3D - 336 407 IPR036638 GO:0046983
Pste1g02175 407 Coils Coil 375 395 - -
Pste1g02175 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 385 IPR011598 GO:0046983
Pste1g02175 407 SMART finulus 341 391 IPR011598 GO:0046983
Pste1g02175 407 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 404 - -
Pste1g02175 407 MobiDBLite consensus disorder prediction 66 87 - -
Pste1g02175 407 MobiDBLite consensus disorder prediction 217 236 - -
Pste1g02175 407 MobiDBLite consensus disorder prediction 276 297 - -
Pste1g02175 407 Pfam Helix-loop-helix DNA-binding domain 340 386 IPR011598 GO:0046983
Pste1g02175 407 MobiDBLite consensus disorder prediction 282 297 - -
Pste1g02175 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 398 IPR036638 GO:0046983
Pste1g02175 407 MobiDBLite consensus disorder prediction 10 28 - -
Pste1g02175 407 FunFam Transcription factor bHLH130 family 336 405 - -
Pste1g02175 407 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02175 Pste-Chr1 7030707 7034743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02175 1 402 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.678 4.42e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g02175 HLH 4e-10 No_clan