Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02157 CTCCGTTAATTTTTATTGTCTAATTTTTTGTTATCTTTGGCGTTACGGTAACCGCGTGACTTTTCCTCTGAAACAGAACGACACTACTGAAAACCTGGATTTGAGTTCTGAAAACCCTAACAATGGCGATGATGCAAGGGGTGCAGAAGAATACACTGTACGTGGGAGGCTTAGCAGAGGAGGTGAACGAATCGATCCTCCACGCGGCGTTTATCCCGTTTGGTGATATAAAAGATGTGAAAACGCCGTTGGATCAGGCCACACAGAAGCACCGTTCCTTTGGCTTCGTCACGTTTCTAGAGAGAGAAGATGCTTCTGCTGCAATGGACAATATGGACGGTGCTGAACTCTATGGCCGCGTTCTCACCGTCAATTACGCCCTCCCTGAACGCATTAAGGGTGGCGAACAGGGCTGGGCCGCACAGCCTATTTGGGCGGACGCGGATACCTGGTTTGAGCGGCAGCAGCAGGAGGAGGAGATGCGGCGGATTGAGGCGGAGAACCGTGCGGCGATGCAGGCGGCGGAGGACTTGCACCGGAAGCAAGCGGCCGAGCAGCGAGAGGGAGAGAAAGAAGAGGAAATTGAGATGAAGAATGATCCTATGGCCAATGCTGAAGCTGAGGTTCTACAACCCAATAATAACCAATGAATTTGTCAAAACGGCTCAACTTGGTGAGGGAAACGTTGTCTTCTCTTCTTTCTTTGCCCCATATGTAATGTGATTATTATTTTCTTTTTAATGCCGGCAACCAGGGTACAATCTAGAATGTGAACTATACAAATTCTGGACCAGTAGACTCACTATGTAATGTGAAATGACTCTTGTTAGATTCTGAAACAGGATAGCTAGTGAAATGAAATCACTATGTAATGTATACAGTTTTTTTCTAAGGCAAATCAATTCATGGGAAGAAAGAAATAACCATTGAGCGGAGTTATGTCATCAAAACCAAAG 956 0.4623 MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDLHRKQAAEQREGEKEEEIEMKNDPMANAEAEVLQPNNNQ 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02157 175 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Pste1g02157 175 MobiDBLite consensus disorder prediction 131 175 - -
Pste1g02157 175 MobiDBLite consensus disorder prediction 131 160 - -
Pste1g02157 175 FunFam Peptidyl-prolyl cis-trans isomerase 2 155 - -
Pste1g02157 175 PANTHER ATPASE E1 2 175 - -
Pste1g02157 175 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Pste1g02157 175 CDD RRM_PPIE 12 86 IPR034168 GO:0003723
Pste1g02157 175 Gene3D - 3 153 IPR012677 -
Pste1g02157 175 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Pste1g02157 175 SMART rrm1_1 11 84 IPR000504 GO:0003723
Pste1g02157 175 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02157 Pste-Chr1 6913879 6914939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02157 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.27e-11 58.9