Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02119 ACGGAGCCGCTCACGCCCAAGTCCTTGGAATCTCAGTCTTCCATACAAACAGCACGCACTCCGAACTAACCCAACCAGGGTTAATTCCGAACCCTCATCGGTCCCGTTAACATTTATTTATACCCCAACTGCACCTCCACTCAAGTTCCATTCTCCCTCTCCCTGTCTTACTTTTCTCTATTTGGCTTCCATGTAAGCCTGATTTTGCACAACACAAACCACTCACTCTCCTAACTTATTTTATTACCCAAAGAGGCATGAGTTGCAACGGTTGCCGCGTCCTTCGAAAGGGTTGCAGCGAGTCTTGTATCCTGCGCCCCTGTCTACAGTGGATCGATACACCTGAAGCTCAAGGCCATGCCACCGTCTTCGTAGCTAAATTCTTCGGCCGGGCCGACCTCATGTCCTTCATTTCCAACGTTCCTCAGGCCCAAAGGCCCGCTCTGTTTCAATCTCTGCTATTTGAAGCCTGTGGAAGAACCGTCAACCCCGTTAACGGGGCTGTTGGACTTCTATGGACAGGAAACTGGCACGTGTGCCAGGCCGCCGTGGAGACTGTACTCCGCGGCGGCACCCTCAGGCCCATACCCGACCTTCTCTCCCTAGACGCTCCCGTTGATGACACCTCCGAAGGGGAAGTTACCTGTACTGATAACTCCAGGCTCCGAGATCCCAACCCCAATTTCCGGTTACCCGGTTCCGCCTCCGATAACACCGCTTCAGCCGGTAAACGCAAGCGGTTTGAAGAGCTTGCCAAGCTACACACGCCCACCGATCTCAATCTCCGCCTGACGCCAAGTTTCCTACAGAACACCTCCAGCCTCGGCTGCCGCCAGGAAATTCGCTGGCCGGGCTCGCCGTCGATGAACTCAGAGGAGTCCGTCACCACCACCGCCTGCTTGGAAAGCGGGATCGGAGACCACTACGCTCCCCACGGAGACCAGAAAGTGCTGAACCTTTTCATCTGA 968 0.5486 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPQAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPIPDLLSLDAPVDDTSEGEVTCTDNSRLRDPNPNFRLPGSASDNTASAGKRKRFEELAKLHTPTDLNLRLTPSFLQNTSSLGCRQEIRWPGSPSMNSEESVTTTACLESGIGDHYAPHGDQKVLNLFI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02119 236 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Pste1g02119 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 217 - -
Pste1g02119 236 MobiDBLite consensus disorder prediction 124 157 - -
Pste1g02119 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02119 Pste-Chr1 6706244 6707290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02119 1 236 AS2 family AT4G37540 59.109 3.90e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste1g02119 LOB 3.2e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02119 1 6706244 6707290 Pste7g00932 7 8656520 8657664 ECH
Pste1g02119 1 6706244 6707290 Pste1g02119 1 6706244 6707290 ECH
Pste1g02119 1 6706244 6707290 Pste4g01201 4 8829750 8832498 PCT
Pste7g00932 7 8656520 8657664 Pste1g02119 1 6706244 6707290 PCT