Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02103 CACCAACTGTACCCTTGTCCAGTCACTTCCTTTTCCCTGGCCCAAATACTTTCTCCCTGCATTAATTTCTCACACCTTCTTTTGTGTTCATCTAATCTATTTTTGGTTTTCAATAACCAAAACCTGTTCACCTTAGTCTTGTCCTTGTGCGCCTATTCCTATTCTTTGAACCCCATATGCAAAAGGAAGATAGACAAGACGAAGAACATGAAAATTCAGTGTGATGTGTGTGAGAAAGCCCCGGCAACCTTGATTTGTTGCGCTGATGAGGCAGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAACACCAGAGGCTTCTTCTTCAATGTTTATCAAACAAGCTTCCCAGATGTGACATATGTCAAGATAAGGCAGCCTTCATATTTTGTGTTGAGGACAGAGCACTCTTCTGTAAAGACTGTGATGAACCAATTCATTTAGCTGGAAGCCTTTCTGCAAACCACCAGCGGTTCCTTGCTACCGGTATCCGGGTGGCTTTGGGTTCTAATTGCACCAAAGGCAGTGAAAAAGGTCACGTGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGCAAGTTTCTTCTCAGCAAGTGCCTAGCTTCACGTCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAATCACCAGACAAAAAGCAAACTCTGGAGTTTGGAGAGCTTGAATGGCTAGCGGATGTGGGCCTTTTTGGTGAACAGTTTCCTCAGGAAGGTTTAGCAGCGGCAGAAGTTCCTCAGCTTCCAATAACACACACAAGCAGTGTTGCCCCACACAAAGCCCCAAAATCCTTTATGTCATACAAAAAGCCTAGGATTGAAGTCCTAGATGAAGATGATGATGAGCACTTTACTGTACCTGATCTTGGTTAAATCACATGGTCATGTATGGAAACCATTGCCTGAATTTATAGTTTGATGAGTTGTATATGCATACTAGGTGGAGATGTTGATGAACTCTTCAATGTGCCTCAGCCCTGATCTTGGATGAAACTCGGGATCATGAGGACTATTGCATGAATTTGTAGATTGATGAGTTGTATATGCATACTTCTCTTAGGACAGTATGTTAACTAGCTGTGTGGAGTTGATAAAATATCTCATTTTAGGAGCTTCCAATGGTTTGATATTTAGAATATAGCATAGATTAAATCTTAGGGAATTAAATTTTTCTTGATTTTTGTGATCATTGCTTACATTCTAGAGGTGCTCACACCACACCATCCTCCTGAAATTGGATGGTTAGCTTCATATGCATGCTTCTGTTAAAGACTATGTTGGCCTAATTGTGGTTTCAAAATCTAACAGCAATTAATTTCATGA 1374 0.4112 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDEPIHLAGSLSANHQRFLATGIRVALGSNCTKGSEKGHVEPSNPNAQEVPVQVSSQQVPSFTSSWAVDDLLELTDFESPDKKQTLEFGELEWLADVGLFGEQFPQEGLAAAEVPQLPITHTSSVAPHKAPKSFMSYKKPRIEVLDEDDDEHFTVPDLG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02103 238 Pfam B-box zinc finger 52 94 IPR000315 GO:0008270
Pste1g02103 238 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Pste1g02103 238 CDD Bbox1_BBX-like 5 47 - -
Pste1g02103 238 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pste1g02103 238 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pste1g02103 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pste1g02103 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Pste1g02103 238 Gene3D Classic Zinc Finger 1 100 - -
Pste1g02103 238 CDD Bbox1_BBX-like 57 98 - -
Pste1g02103 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02103 Pste-Chr1 6597107 6601224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02103 1 161 Orphan Transcription Factor Family AT1G06040 67.262 1.28e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pste1g02103 zf-B_box 8.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03471 3 27329599 27332294 Pste1g02103 1 6597107 6601224 PCT