LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g02102	ATGGGTCTTTCAAGTTCTGTCCAACAAAAGCTAAGTGCAAATTGTATCCTAAATGGAAATGAAGTACATATTGGGGGAGACAGAGGAGAAAGACCATTTGAGAACTTTGGAATCGATCTATTATCCAACGAGAAAAAGTGGTGTTGGGAAGTGGAGCAACGTAAAAGAGATAAGGAGGGTGCCACAGTGTACGAGGTGGAAAGGGTATTGCAGGGCTCGATGGAAACACGCAACACAGAGCTAATGGAAAAGGCTACTAACGTTGGAAGCTTGACTGGTAGACGAAACGAATATGGCCAACAAAGGAGTAAAGATATGGGAATCTTAGTGGGTCGTGATTTAGAGAACATAACACATAAAAGGGTGGGCAGCGGAAGAGGCGTGGAATGGGCTACAACCCAAGGTGCGTCAAGTTCAATCAATGTGGGACCTAATGGTTCATCAAAGCCAGGGAAGAAAGAAGAAAATTCAACGGCCACTCCCAGTAGTATGGATATGCTCGACTTAGAACTCGTCAAGTTAATGAACGCGGGAACTGAAGCAATAGAAGGCATAATTTTGGATGTGTCTAAAATTGAGGATCTGCATTTGAGCTTTGATTCCTTTACAAAAATGACTAGAATAAGATTTCTTAAATTTTATTATGGAAAACAGAGTAGCACAGGTAAAATTTACCTTCCTAAGAATGGTCTCAAGTCACTGTCTAACAAATTAAGGTATCTTCAATGGCATGGGTACTGCTTGGAGTCTTTGCCATCAACCTTTTCTGGTAAATTGCTTGTCGAGCTTTCTATGCCCTACAGCAACCTTCAAAAGCTTTGGGACGGAGTTCAGAATCTTGTGAATTTAAAGGACATTGACCTTAGATTCTGCGAAAATCTGGTTGAGGTCCCAGACTTATCCATGGCAATAAATCTGGAAGACTTATCCCTTTCTCAGTGTAAAAGTCTGCGTCAAGTTCATCCATCTATATTGTCTCTCCCAAAGCTTCAGAGGTTGGATTTAGAAGGCTGCACTGAAATTGAAAGCTTTCAAAGTGGCCTTCATTTAGAATCTCTCCAAGACCTCCGTCTGAGCAATTGCTCCTCCCTCAAGGAATTTTCAGTATCCTCAATGGAGCTTCGAAACTTATGGTTAGATGGTACACATATCCATGAATTGCCCTCATCAATTTGGCGTTGTGCAAACCTCAAGTTTATCACAGCACAAGGTTGTGACAACCTTGGTGGCTTTGGGGACAAGTTATCTCATGATCCAAGAACATCTTTTAATAGTCTGGTCCTTTCTGGGTGCAAACAACTGAATGCATCAAACCTATGTTCTATCCTTGATGGTATGAGGTCTTTAACAACTTTAGAGTTGGAAAATTGTTTGAACTTAAGAACAGTCCCTGACAATATTGGCATGCTATCATCATTGCAGCGCTTAAAACTAAGTGGAAGTAATGTTGAAAGCTTGCCTACAAGCTTGAAGAACCTTTTGATGCTGAGAAGGCTTTATTTAGATAACTGCATGAAACTTTTTTCTCTGCCAGAACTTCCTCAGTCTCTGTGGTTATTAAGTGCAGTTAATTGTGCATCTTTGGTGGCAAACATCACTCAATTGAATATTTCTTTACAACTTAAACATGGACTTGAAGATCTCCCTCAATCTGTTTTCCTCCCTGGAAACCATGTTCCTGACAAGTTCAATTTTCATGCTAAAGGGGCTTCAGTAACTATTCCGTGTCTTCCACTTTCTGACTTATGCGGCTTAGTTTTTTGCGTCTTTCTTTCTCAGTCACCCTCACATGGAAAATACGTATCTGTTGATTGTTTTATCTACAAAAATTCCCAAAGAGTTGATGCCAGGGGCGCCTTGCTGGGTAATCAGAATTTGATTTTGGATCATTTGTTTCTCTGGTTTGTTGACATCAACAAATTTGGAAACGATTCCTTGCTTAAGAGATTACAAAATGGTGAAGCGTGTGATGCTTCCAACATATCATTTGAATTCTTGGTGGAAGATGAGGATGGAGAATGGTCAACGAAGAGGATAAAAGGGTGTGGGATCTACCCCATATATGCCTCTGATCATGGCTATACCTCTAAACAAAAGGGGGTGGAATTGGAGTTTGGGGATAGCATTAGAGATATTGTTGAGTTAGTACCTCACAGTTCTAATGATAATTATGACTTACAAGTCATAGTATCCGATGAAGAAGACCAACAACAACCAAACCTTATTCCACTATGTGAGTTGGACAACAATGAAGACCACCGGACTAGGAAATTACAGGAAGTTAAGCACCGAACAATCACTACAGATTTGCAGCATGTAAAAGTAGACTCAGAGGAAAATATTGTGTGTCAAAGTTTCTTAGCTGGTGGTACAATGGAAAAACTACAAAGTTTCGAGGAAGGGGATCACTATATTATTTCAACACCTAAAAATCAAATTATCCCGTTTGACTCCCCAAGTGCTTCCAACATCGATTCAAATCAGATTATTGAAGTGTTAGAAGAAAAAGACTTGACATACTATCAAGTACATGAATGTTGTAAGCCAGATATTTTGGACAAAGCTCAAGTTCTTGTGGAGAATGACAATCCGCATTTGGAACCAGATTGGGATCTATTTGCTGAGATTGAGAGCATGTTACGTGATAATTATGAGATATTTCCCATGTCAACTCTCTCAGCTACTGTTTCAGAGACTGAAGTCGAAGGTCCAAATGTGGCAGCTATCCTTGAAAAATTAGAGACCCTTTTGGAGACCTCCCTTGAAACTCTCTCTTCTGATGATGAAGTCAAACAACAAGTCCATCAAGTTTTGGATCAACTAGTCCAATTCGAAGACCAAGTTCCTGTTGGGCTCCATCCTGTAATTAACAACTTGAAAACTTTCATTGAAGGTGTTGATGTCAGATTTGTGACTACCCAAAAAACTATCAAAGATTATGATCAGCTGCTCCAGTCAAGGTCTCTTCTATCAAAACAATTGGAAAGTGCCAAAACCCGACAGGAAGAAATTAATTCAAAAGTCTCTGAAGGTAAATCACAGTTTGAAAAGATCAATTCTGAGATTTTTGAACTTGAACACAAGTTATGCACTTTGGTTACGGATAGAGAGAAGCTAAAGAGAACCATAGACAATTATTGTGTAGAAAATAACAAGCTAAAGAATGAGGTTGCTAAATGGCTTCCAAAAAGCAAGACTATAACCACTGCTTTGAGGGAATCCAAGACTTCTTACAAAGTGGCCCAAATAATTAAGAAGAAAGCAGAGGATGAGTGGATTGATCTGAAGAAGACTTTTTTGGCAGAAAGATTTGAATCGTCACCAATATATGCAACATATTTTGACATTAGGCCTTAG	3357	0.3947	MGLSSSVQQKLSANCILNGNEVHIGGDRGERPFENFGIDLLSNEKKWCWEVEQRKRDKEGATVYEVERVLQGSMETRNTELMEKATNVGSLTGRRNEYGQQRSKDMGILVGRDLENITHKRVGSGRGVEWATTQGASSSINVGPNGSSKPGKKEENSTATPSSMDMLDLELVKLMNAGTEAIEGIILDVSKIEDLHLSFDSFTKMTRIRFLKFYYGKQSSTGKIYLPKNGLKSLSNKLRYLQWHGYCLESLPSTFSGKLLVELSMPYSNLQKLWDGVQNLVNLKDIDLRFCENLVEVPDLSMAINLEDLSLSQCKSLRQVHPSILSLPKLQRLDLEGCTEIESFQSGLHLESLQDLRLSNCSSLKEFSVSSMELRNLWLDGTHIHELPSSIWRCANLKFITAQGCDNLGGFGDKLSHDPRTSFNSLVLSGCKQLNASNLCSILDGMRSLTTLELENCLNLRTVPDNIGMLSSLQRLKLSGSNVESLPTSLKNLLMLRRLYLDNCMKLFSLPELPQSLWLLSAVNCASLVANITQLNISLQLKHGLEDLPQSVFLPGNHVPDKFNFHAKGASVTIPCLPLSDLCGLVFCVFLSQSPSHGKYVSVDCFIYKNSQRVDARGALLGNQNLILDHLFLWFVDINKFGNDSLLKRLQNGEACDASNISFEFLVEDEDGEWSTKRIKGCGIYPIYASDHGYTSKQKGVELEFGDSIRDIVELVPHSSNDNYDLQVIVSDEEDQQQPNLIPLCELDNNEDHRTRKLQEVKHRTITTDLQHVKVDSEENIVCQSFLAGGTMEKLQSFEEGDHYIISTPKNQIIPFDSPSASNIDSNQIIEVLEEKDLTYYQVHECCKPDILDKAQVLVENDNPHLEPDWDLFAEIESMLRDNYEIFPMSTLSATVSETEVEGPNVAAILEKLETLLETSLETLSSDDEVKQQVHQVLDQLVQFEDQVPVGLHPVINNLKTFIEGVDVRFVTTQKTIKDYDQLLQSRSLLSKQLESAKTRQEEINSKVSEGKSQFEKINSEIFELEHKLCTLVTDREKLKRTIDNYCVENNKLKNEVAKWLPKSKTITTALRESKTSYKVAQIIKKKAEDEWIDLKKTFLAERFESSPIYATYFDIRP	1118

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g02102	1118	Pfam	Leucine Rich Repeat	260	278	IPR011713	-
	Pste1g02102	1118	Coils	Coil	1036	1056	-	-
	Pste1g02102	1118	MobiDBLite	consensus disorder prediction	130	162	-	-
	Pste1g02102	1118	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	374	525	IPR044974	GO:0006952
	Pste1g02102	1118	Gene3D	Ribonuclease Inhibitor	374	546	IPR032675	-
	Pste1g02102	1118	Gene3D	Ribonuclease Inhibitor	132	373	IPR032675	-
	Pste1g02102	1118	MobiDBLite	consensus disorder prediction	125	162	-	-
	Pste1g02102	1118	SUPERFAMILY	L domain-like	186	526	-	-
	Pste1g02102	1118	FunFam	Disease resistance protein RPS4	179	372	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g02102	Pste-Chr1	6593349	6607054	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g02102	172	499	WRKY Transcription Factor Family	AT4G12020	35.294	3.50e-38	154