Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02098 ACAGGAATAGAACAAGACCACATAGCTACAAAGAAACTTATTAACATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCTCCTGAGGAAGATGAAAAACTCATCCGGTACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCTGAGAAAGCTGGTCTTCAAAGGTGTGGTAAGAGTTGTCGACTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACCTGAAGAGGAGAAGTTAATTATTAGTCTTCATGGGGTCGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTACCAGGTAGAACTGACAACGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGAATTCATCAATCAGCAGCACTGTACAAAGTGTTGATCATCCACAGTTCAATTATAATTCCAATCAAGTAGATCACTATGGCAACCAAGAAAATGTAACAACAAAGCCAGCAGTGCAAGAAACCTTATTTTCCTCGACGTGCCCCCTATTTATGTTTGACACTAGTTCATTAGATCAAGGGACAACAACAGTAGACACGACGACTGTAAGAGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCACTGAAACATGGAACTTGAGCCACCACCAAGTGCATGCCCTTCCTCCTCAACCCACAGCAACTTTTGCAGCAGCTGCAGTAATTGATACTACGAATTATCTGCCACCATTGATAGAGAACGTGGAAAACATGGTGCCAAATATGGAAGTACAGTCTTGTAGTATAGACGAGGAAGGAGAAATGGCACTGGAGTGTTTGCGGAGACAAGAGTTGAATATTGAGTGGGTGGAGAATCAACAGCAATGTCCCAGCTTTCTTTTCTGGGACAATGTTGAAGGACAACTTGGGGGGGAAGAACTAGCACCAAACACGTCAAATATGGGAACCAATACACTTTCACCTTTTCCTTCCTCTTTATGACTGTCCCCACTCGTACTACTCTTTTTCTCATGCTCCC 1048 0.4284 TGIEQDHIATKKLINMGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVNSSISSTVQSVDHPQFNYNSNQVDHYGNQENVTTKPAVQETLFSSTCPLFMFDTSSLDQGTTTVDTTTVRAELFQDSLGLSTETWNLSHHQVHALPPQPTATFAAAAVIDTTNYLPPLIENVENMVPNMEVQSCSIDEEGEMALECLRRQELNIEWVENQQQCPSFLFWDNVEGQLGGEELAPNTSNMGTNTLSPFPSSL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02098 336 Gene3D - 21 81 - -
Pste1g02098 336 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Pste1g02098 336 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Pste1g02098 336 Pfam Myb-like DNA-binding domain 82 126 IPR001005 -
Pste1g02098 336 SMART sant 81 129 IPR001005 -
Pste1g02098 336 SMART sant 28 78 IPR001005 -
Pste1g02098 336 PANTHER MYB DOMAIN PROTEIN 55 16 253 - -
Pste1g02098 336 FunFam Transcription factor MYB26 83 154 - -
Pste1g02098 336 SUPERFAMILY Homeodomain-like 26 123 IPR009057 -
Pste1g02098 336 CDD SANT 32 76 IPR001005 -
Pste1g02098 336 CDD SANT 84 127 IPR001005 -
Pste1g02098 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 76 IPR017930 -
Pste1g02098 336 Gene3D - 84 153 - -
Pste1g02098 336 MobiDBLite consensus disorder prediction 316 336 - -
Pste1g02098 336 FunFam MYB transcription factor 21 81 - -
Pste1g02098 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Pste1g02098 336 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02098 Pste-Chr1 6585406 6587259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02098 16 320 MYB Transcription Factor Family AT1G63910 51.821 2.88e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g02098 Myb_DNA-binding 5.2e-15 CL0123