Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02092 ATGTCAGTGCCTTACGTTTCTAACTATCATAAACAATCAGCTCCATCCCCAACTTCTTCATCTGGGAATAGAATAAGCCCTGCAATTCTTTTCATCATAGTTATTTTAGCTGTGGTATTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCGTAAGGCATAGGTCTTCTTCATCAATTTCCCAATCAAACAGGTACCCTGACATGTCTGAATCGGATGCTTACCAGAGACAGTTACAGCAGCTCTTCCACCTTCATGATTCAGGTCTGGATCAGGCTTTCATTGATGCGCTCCCTGTCTTCTTTTACAAAGAGATAATAGGCTTGAAAGAGCCTTTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAGCTGAGATTGCTTCCCATGTGTAACCATGCTTTTCACATTGAATGCATAGACACATGGCTGTTGTCCAATTCAACTTGCCCTCTCTGTAGAGGGACTCTCTATTCACCAGGCTTTGCCCTTGAGAACTCAGCTTTTGACTTTGAAAGTCAACTTGAGGAAGATGGGGTCTCAGGCAGTGGTGGAGGTGGGGCTGGGCTTATTTCTGTTAACAAAACTACAGAAAATCACATAGTGACTGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGTAATAATAATGGAGATGGGGTGGAGAGAGGTGAAGGAGAGAGCAGTGGTGGTAATTTGAATGTAAGGCGATGTTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTTTAGGCCCTACAAGAGGTGATGGAGGGGGCAGTGGGAGTATGAGACAACTGAAGGGAAGAGCAACCCCAAATGGGAGTACTCTCATTGATGGGGATGTTGAAGGCAAGAAAATCAGCATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTGACAGGCTCATCAGAAGCTCATTTCCATAATTACTCTGTCACTTCAACTTTGCCATGGATTAATAAAGCCAGAGTAGCAACTTCTTTCAAGGAGCAGGAAGATGAAAGTGAAGCCAATAAGGGGTTGCTTGCATTTGGATGCTTTGTAGATTTTCAGATCAGGATTGTAGAGTCTCAGCTAGTGGATAGTGGTGTGGGGTTATAG 1179 0.4317 MSVPYVSNYHKQSAPSPTSSSGNRISPAILFIIVILAVVFFILGLLHLLVRFLVRHRSSSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFALENSAFDFESQLEEDGVSGSGGGGAGLISVNKTTENHIVTGKRVFSVRLGKFRSNNNGDGVERGEGESSGGNLNVRRCYSMGSFQYVVADSDLRVALGPTRGDGGGSGSMRQLKGRATPNGSTLIDGDVEGKKISIARKGESFSVSKIWQWSRKDKLTGSSEAHFHNYSVTSTLPWINKARVATSFKEQEDESEANKGLLAFGCFVDFQIRIVESQLVDSGVGL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02092 392 CDD RING-H2_EL5-like 116 159 - -
Pste1g02092 392 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Pste1g02092 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 20 317 - -
Pste1g02092 392 MobiDBLite consensus disorder prediction 267 290 - -
Pste1g02092 392 SUPERFAMILY RING/U-box 96 165 - -
Pste1g02092 392 Pfam Ring finger domain 116 159 IPR001841 -
Pste1g02092 392 MobiDBLite consensus disorder prediction 1 22 - -
Pste1g02092 392 FunFam RING-H2 finger protein ATL46 79 164 - -
Pste1g02092 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 164 IPR013083 -
Pste1g02092 392 SMART ring_2 117 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02092 Pste-Chr1 6575346 6577880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02092 44 329 C3H Transcription Factor Family AT2G18650 40.125 2.55e-60 199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02092 1 6575346 6577880 Pste7g00714 7 6554034 6555197 PCT
Pste6g01748 6 7895094 7898800 Pste1g02092 1 6575346 6577880 PCT