Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pste1g02089 | GCATAAAAAATCGACCCTCTATTCTAGGGTTTCTTCCGCTCCCAAAAGCAAACAATCTTAGGGAAGTTGTGTGTTGGGTGGTCGCAATGCCGCTTCCGGCAAAACCGACGCGGGATTCGGAGGAGTCGGCGAGTCCGTCGAACAACCTTTGGGTAGGGAATCTAGCGCCGGATGTGAGCGACGCCGATCTGATGGAGCTCTTTGCCAAATACGGCGCACTCGACAGCGTAACCTCTTATTCCGCTCGCAGTTACGCCTTCGTCTTCTTCAAACGCGTCGAAGATGCCAAAGCCGCTAAAAACAATCTCCAAGGCACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCTTTGTGTGATTCGGTGAACTTCCTGTTCTGGACAACACTTGGATTGGCTCGAATCGCTAGTGACGTGCAAAATGCAAAACAGCAACAAGCAAAGGCATGTAAGCAACTTTGGGTGGGTGGTATTAGCCCAGCTATTGCAAAAGAAGATTTTGAGGCCGAGTTTCGTAAATTTGGTAAAATTGAAGATTTTAAATTCTTCAGAGACAGAAATACTGCCTGTGTTGAATTTTTCAATTTGGAAGATGCCACTCAGGCCATGAAAATCATGAATGGGAAACGAATGGGCGGGGAACATATTCGTGTTGACTTTCTTCGATCACAAACTACAAAAAGGGATCAGTTGCTTGATTATGCTCAGTTTCAAGGAAAAAGCATGGGGCCTACTGATGCTTATTCTGGACAGAAAAGACCACTACATTCCCAACCACCAATGGGGAGGAAAGGTGACAGTCAACCAAGTAACATTTTGTGGATTGGATATCCGCCTGCTGTTCAGATTGATGAACAAATGCTCCACAACGCCATGATTTTATTTGGTGAAATTGAAAGAATCAAGAGTTTCCCTATGAGAAATTATTCTATTGTTGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCCAGCAGTGACCTGGTACCTGGCAGTGATTACCCTGGCTTTTTCCCTGGAAGTAATGGACCGAGACCTGATGTATTGCTGAATGAGCATCCGTTTCGACCATTACAAATGGATGTATTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTTCTGGACAGTTACCTCCTAGTGGTATCATGGGACCAAACGTACCAATGCGACCTTTTGGCCCTCATGGTGGTGTTGAATCTGTTATTTCTGGCCATGAGTTTAGTGACATTAATGCGCTCCACAAATTTCAGGATGGTAGCTCCAAGAGTAACTTGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCGGGCTCTAGGCTTCCTCCTAGATCAACATCTGGTGCATGGGATGTACTTGACATAAACCATATCCCAAGAGATTCTAAACGTTCAAGGATAGAAGGACCCTTGCCTGTTGATGAAGCCCCATTTCCTTTGAGGAATGTAGATGATCGGGGGTTAGCTTTAGAACAAACTTATGGGATTGATCCTGCTATTGATGGAGGTAGTTCTGGTCCATATGTAAACACTCAAGGAAAGAGTCACCTTGGTCCGGTTAGCTCAAGGATTACAACTGGAGTACATGGTGTTGTCCATCCTGATATTGATCATATTTGGCGTGGAGTAATTGCGAAAGGTGGAACTCCTGTTTGTCGTGCTAGATGTGTCCCAATTGGGAAAGGAATTGGGACTGAGCTTCCTGATGTTGTTGATTGCTCAGCTAGGACAGGATTGGACATACTCACAAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGACGATTTTGCTTCATATACTGAATTCCTCCGTTATCTTAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCCTGGTGCCTCCTTCTGATTTTCTCACGAGAGTTTTGAAAGTCACTGGACCTGAGCGTCTCTATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCTATGCAACAACTGTCGCATTTGCCTGCACCAACAACTCAGTATATGCAGCAGATTCCTCCTCCGCAGCCTGAATATGGTTCGATTTCTATAAAAGAGGAACAGGTTTTGCCAATGGATTATAACAGGCCGTTACAGGAGGATTCTAAGCTTCCTGCTAAGCCAGTCTATCCGCCTACAGGTGGGCCCCTTTCAGTTAATCCCGTGCCTTCAGATTATCCTCCTAATAGTACTGCTACTGGGTCCCAAGCTGGAGTTGCATTAACCCCTGAGCTTATTGCAACTTTAGCTTCTTTACTTCCGGCAACTACACAATCATCTGTCACGGATGGAATCAAGTCAACAGTAGGCTCCTCGACCATGAAGCCTCCATTTCCTCCCATGGCACCAAATGATGGAAATCAATCTCATTTATGGAAACAGGATAATCAAATTGTAGATCAATCCACTAATCATCCTCAGCAGTTGAGGAGTATGTATAACATTCACAATACTCACTACCAGCCCTATCCACCAGTGTCTGCACCTGCTGGCAATCCTCCTCAAGTGGTCTCTGGCAGTTCTCATATCCAAGATACTGCTACTAGCTTGCAGCAGCAAGGTGCTGTTGCATCAAGACATATGCCTAATTTCATGATGCCTACACAAAGTGGGCAGATAACTGTATCTCCCCATGCCAGTCAACATTATCAAGTTGAAGTCTCCCCTAGCAATCAGAAAGGTTTTGGAATGCTGCAAGGAACAGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCTGCCTTTCCAGCAACCTAATAACAATTCTCTGGCTTTCCAGCAACCTAATAACAATTCTCTGGCTTTCCAGCAACCTAATAATTCTATTGCCTTATCTAATCAAGTTAATAATACTTCACAGCAGCAAACAGCCTTGCCATATACAGCGGACCAAGTAAACTCAGACACCCCCAATCAGCAACTCCCTATTTTTGGAGCCGGTCAAGGCACACCAGAGGTGGAAGCTGATAAGAACCAGAGGTACCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAGCAGCAACAACAAGCCCCAGGAGGACATGGACCTGGAATTCAACAATGAGAAATGTTCTGTTATGGTGGTGCTTATTAGGGAGATGCGTTCCACAAAGGTGACGTGACGGCGATCTGACCATCTTTCAACAGCCATTTCTATTTAATCATTTAGTACAACCTACTCTTACCTTTAACGTCTTTGCACTCTACAAGGTTCGTTTTGTTTGTTGTTACTGTTTAGTGTACATAACAATTTTTTGGGCTACCTACCAAATCCAATGTTTCGTTTTCTGTTCATTTTGTTCTCGCGTGAATGCTATGCTACTTTTCCAAACCAAATAACAAGTAGACTATAGTTCGTTTCAATGTCAAT | 3539 | 0.4405 | MPLPAKPTRDSEESASPSNNLWVGNLAPDVSDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNNLQGTSLRGSSLKIEFARPALCDSVNFLFWTTLGLARIASDVQNAKQQQAKACKQLWVGGISPAIAKEDFEAEFRKFGKIEDFKFFRDRNTACVEFFNLEDATQAMKIMNGKRMGGEHIRVDFLRSQTTKRDQLLDYAQFQGKSMGPTDAYSGQKRPLHSQPPMGRKGDSQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPMRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDLVPGSDYPGFFPGSNGPRPDVLLNEHPFRPLQMDVFGHNRPMVPNNFSGQLPPSGIMGPNVPMRPFGPHGGVESVISGHEFSDINALHKFQDGSSKSNLGPNWKRPSPPAPGMLSSPAPGSRLPPRSTSGAWDVLDINHIPRDSKRSRIEGPLPVDEAPFPLRNVDDRGLALEQTYGIDPAIDGGSSGPYVNTQGKSHLGPVSSRITTGVHGVVHPDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVTGPERLYGVVLKFPPVPSSAPMQQLSHLPAPTTQYMQQIPPPQPEYGSISIKEEQVLPMDYNRPLQEDSKLPAKPVYPPTGGPLSVNPVPSDYPPNSTATGSQAGVALTPELIATLASLLPATTQSSVTDGIKSTVGSSTMKPPFPPMAPNDGNQSHLWKQDNQIVDQSTNHPQQLRSMYNIHNTHYQPYPPVSAPAGNPPQVVSGSSHIQDTATSLQQQGAVASRHMPNFMMPTQSGQITVSPHASQHYQVEVSPSNQKGFGMLQGTDASVLYNSQAFQQPNNNSLPFQQPNNNSLAFQQPNNNSLAFQQPNNSIALSNQVNNTSQQQTALPYTADQVNSDTPNQQLPIFGAGQGTPEVEADKNQRYQSTLQFAANLLLQIQQQQQQAPGGHGPGIQQ | 1048 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pste1g02089 | 1048 | MobiDBLite | consensus disorder prediction | 412 | 451 | - | - | |
Pste1g02089 | 1048 | MobiDBLite | consensus disorder prediction | 215 | 244 | - | - | |
Pste1g02089 | 1048 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 21 | 84 | IPR000504 | GO:0003723 | |
Pste1g02089 | 1048 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 128 | 191 | IPR000504 | GO:0003723 | |
Pste1g02089 | 1048 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 258 | 312 | IPR000504 | GO:0003723 | |
Pste1g02089 | 1048 | MobiDBLite | consensus disorder prediction | 725 | 739 | - | - | |
Pste1g02089 | 1048 | FunFam | Flowering time control protein FPA | 11 | 93 | - | - | |
Pste1g02089 | 1048 | CDD | RRM_SF | 21 | 87 | - | - | |
Pste1g02089 | 1048 | SUPERFAMILY | RNA-binding domain, RBD | 7 | 91 | IPR035979 | GO:0003676 | |
Pste1g02089 | 1048 | Gene3D | - | 109 | 205 | IPR012677 | - | |
Pste1g02089 | 1048 | Gene3D | - | 5 | 93 | IPR012677 | - | |
Pste1g02089 | 1048 | SUPERFAMILY | RNA-binding domain, RBD | 224 | 324 | IPR035979 | GO:0003676 | |
Pste1g02089 | 1048 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 19 | 91 | IPR000504 | GO:0003723 | |
Pste1g02089 | 1048 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 126 | 198 | IPR000504 | GO:0003723 | |
Pste1g02089 | 1048 | MobiDBLite | consensus disorder prediction | 988 | 1011 | - | - | |
Pste1g02089 | 1048 | SMART | rrm1_1 | 127 | 194 | IPR000504 | GO:0003723 | |
Pste1g02089 | 1048 | SMART | rrm1_1 | 247 | 315 | IPR000504 | GO:0003723 | |
Pste1g02089 | 1048 | SMART | rrm1_1 | 20 | 87 | IPR000504 | GO:0003723 | |
Pste1g02089 | 1048 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 246 | 319 | IPR000504 | GO:0003723 | |
Pste1g02089 | 1048 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 17 | 96 | - | - | |
Pste1g02089 | 1048 | FunFam | Flowering time control protein FPA isoform A | 124 | 238 | - | - | |
Pste1g02089 | 1048 | CDD | RRM_SF | 128 | 194 | - | - | |
Pste1g02089 | 1048 | Gene3D | - | 236 | 322 | IPR012677 | - | |
Pste1g02089 | 1048 | SUPERFAMILY | RNA-binding domain, RBD | 119 | 214 | IPR035979 | GO:0003676 | |
Pste1g02089 | 1048 | MobiDBLite | consensus disorder prediction | 714 | 751 | - | - | |
Pste1g02089 | 1048 | FunFam | flowering time control protein FPA | 239 | 332 | - | - | |
Pste1g02089 | 1048 | Pfam | SPOC domain | 537 | 653 | IPR012921 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pste1g02089 | Pste-Chr1 | 6555417 | 6569634 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pste1g02089 | 2 | 237 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 24.390 | 2.97e-12 | 68.9 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pste3g03477 | 3 | 27381268 | 27387108 | Pste1g02089 | 1 | 6555417 | 6569634 | PCT |