Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02089 GCATAAAAAATCGACCCTCTATTCTAGGGTTTCTTCCGCTCCCAAAAGCAAACAATCTTAGGGAAGTTGTGTGTTGGGTGGTCGCAATGCCGCTTCCGGCAAAACCGACGCGGGATTCGGAGGAGTCGGCGAGTCCGTCGAACAACCTTTGGGTAGGGAATCTAGCGCCGGATGTGAGCGACGCCGATCTGATGGAGCTCTTTGCCAAATACGGCGCACTCGACAGCGTAACCTCTTATTCCGCTCGCAGTTACGCCTTCGTCTTCTTCAAACGCGTCGAAGATGCCAAAGCCGCTAAAAACAATCTCCAAGGCACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCTTTGTGTGATTCGGTGAACTTCCTGTTCTGGACAACACTTGGATTGGCTCGAATCGCTAGTGACGTGCAAAATGCAAAACAGCAACAAGCAAAGGCATGTAAGCAACTTTGGGTGGGTGGTATTAGCCCAGCTATTGCAAAAGAAGATTTTGAGGCCGAGTTTCGTAAATTTGGTAAAATTGAAGATTTTAAATTCTTCAGAGACAGAAATACTGCCTGTGTTGAATTTTTCAATTTGGAAGATGCCACTCAGGCCATGAAAATCATGAATGGGAAACGAATGGGCGGGGAACATATTCGTGTTGACTTTCTTCGATCACAAACTACAAAAAGGGATCAGTTGCTTGATTATGCTCAGTTTCAAGGAAAAAGCATGGGGCCTACTGATGCTTATTCTGGACAGAAAAGACCACTACATTCCCAACCACCAATGGGGAGGAAAGGTGACAGTCAACCAAGTAACATTTTGTGGATTGGATATCCGCCTGCTGTTCAGATTGATGAACAAATGCTCCACAACGCCATGATTTTATTTGGTGAAATTGAAAGAATCAAGAGTTTCCCTATGAGAAATTATTCTATTGTTGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCCAGCAGTGACCTGGTACCTGGCAGTGATTACCCTGGCTTTTTCCCTGGAAGTAATGGACCGAGACCTGATGTATTGCTGAATGAGCATCCGTTTCGACCATTACAAATGGATGTATTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTTCTGGACAGTTACCTCCTAGTGGTATCATGGGACCAAACGTACCAATGCGACCTTTTGGCCCTCATGGTGGTGTTGAATCTGTTATTTCTGGCCATGAGTTTAGTGACATTAATGCGCTCCACAAATTTCAGGATGGTAGCTCCAAGAGTAACTTGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCGGGCTCTAGGCTTCCTCCTAGATCAACATCTGGTGCATGGGATGTACTTGACATAAACCATATCCCAAGAGATTCTAAACGTTCAAGGATAGAAGGACCCTTGCCTGTTGATGAAGCCCCATTTCCTTTGAGGAATGTAGATGATCGGGGGTTAGCTTTAGAACAAACTTATGGGATTGATCCTGCTATTGATGGAGGTAGTTCTGGTCCATATGTAAACACTCAAGGAAAGAGTCACCTTGGTCCGGTTAGCTCAAGGATTACAACTGGAGTACATGGTGTTGTCCATCCTGATATTGATCATATTTGGCGTGGAGTAATTGCGAAAGGTGGAACTCCTGTTTGTCGTGCTAGATGTGTCCCAATTGGGAAAGGAATTGGGACTGAGCTTCCTGATGTTGTTGATTGCTCAGCTAGGACAGGATTGGACATACTCACAAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGACGATTTTGCTTCATATACTGAATTCCTCCGTTATCTTAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCCTGGTGCCTCCTTCTGATTTTCTCACGAGAGTTTTGAAAGTCACTGGACCTGAGCGTCTCTATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCTATGCAACAACTGTCGCATTTGCCTGCACCAACAACTCAGTATATGCAGCAGATTCCTCCTCCGCAGCCTGAATATGGTTCGATTTCTATAAAAGAGGAACAGGTTTTGCCAATGGATTATAACAGGCCGTTACAGGAGGATTCTAAGCTTCCTGCTAAGCCAGTCTATCCGCCTACAGGTGGGCCCCTTTCAGTTAATCCCGTGCCTTCAGATTATCCTCCTAATAGTACTGCTACTGGGTCCCAAGCTGGAGTTGCATTAACCCCTGAGCTTATTGCAACTTTAGCTTCTTTACTTCCGGCAACTACACAATCATCTGTCACGGATGGAATCAAGTCAACAGTAGGCTCCTCGACCATGAAGCCTCCATTTCCTCCCATGGCACCAAATGATGGAAATCAATCTCATTTATGGAAACAGGATAATCAAATTGTAGATCAATCCACTAATCATCCTCAGCAGTTGAGGAGTATGTATAACATTCACAATACTCACTACCAGCCCTATCCACCAGTGTCTGCACCTGCTGGCAATCCTCCTCAAGTGGTCTCTGGCAGTTCTCATATCCAAGATACTGCTACTAGCTTGCAGCAGCAAGGTGCTGTTGCATCAAGACATATGCCTAATTTCATGATGCCTACACAAAGTGGGCAGATAACTGTATCTCCCCATGCCAGTCAACATTATCAAGTTGAAGTCTCCCCTAGCAATCAGAAAGGTTTTGGAATGCTGCAAGGAACAGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCTGCCTTTCCAGCAACCTAATAACAATTCTCTGGCTTTCCAGCAACCTAATAACAATTCTCTGGCTTTCCAGCAACCTAATAATTCTATTGCCTTATCTAATCAAGTTAATAATACTTCACAGCAGCAAACAGCCTTGCCATATACAGCGGACCAAGTAAACTCAGACACCCCCAATCAGCAACTCCCTATTTTTGGAGCCGGTCAAGGCACACCAGAGGTGGAAGCTGATAAGAACCAGAGGTACCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAGCAGCAACAACAAGCCCCAGGAGGACATGGACCTGGAATTCAACAATGAGAAATGTTCTGTTATGGTGGTGCTTATTAGGGAGATGCGTTCCACAAAGGTGACGTGACGGCGATCTGACCATCTTTCAACAGCCATTTCTATTTAATCATTTAGTACAACCTACTCTTACCTTTAACGTCTTTGCACTCTACAAGGTTCGTTTTGTTTGTTGTTACTGTTTAGTGTACATAACAATTTTTTGGGCTACCTACCAAATCCAATGTTTCGTTTTCTGTTCATTTTGTTCTCGCGTGAATGCTATGCTACTTTTCCAAACCAAATAACAAGTAGACTATAGTTCGTTTCAATGTCAAT 3539 0.4405 MPLPAKPTRDSEESASPSNNLWVGNLAPDVSDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNNLQGTSLRGSSLKIEFARPALCDSVNFLFWTTLGLARIASDVQNAKQQQAKACKQLWVGGISPAIAKEDFEAEFRKFGKIEDFKFFRDRNTACVEFFNLEDATQAMKIMNGKRMGGEHIRVDFLRSQTTKRDQLLDYAQFQGKSMGPTDAYSGQKRPLHSQPPMGRKGDSQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPMRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDLVPGSDYPGFFPGSNGPRPDVLLNEHPFRPLQMDVFGHNRPMVPNNFSGQLPPSGIMGPNVPMRPFGPHGGVESVISGHEFSDINALHKFQDGSSKSNLGPNWKRPSPPAPGMLSSPAPGSRLPPRSTSGAWDVLDINHIPRDSKRSRIEGPLPVDEAPFPLRNVDDRGLALEQTYGIDPAIDGGSSGPYVNTQGKSHLGPVSSRITTGVHGVVHPDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVTGPERLYGVVLKFPPVPSSAPMQQLSHLPAPTTQYMQQIPPPQPEYGSISIKEEQVLPMDYNRPLQEDSKLPAKPVYPPTGGPLSVNPVPSDYPPNSTATGSQAGVALTPELIATLASLLPATTQSSVTDGIKSTVGSSTMKPPFPPMAPNDGNQSHLWKQDNQIVDQSTNHPQQLRSMYNIHNTHYQPYPPVSAPAGNPPQVVSGSSHIQDTATSLQQQGAVASRHMPNFMMPTQSGQITVSPHASQHYQVEVSPSNQKGFGMLQGTDASVLYNSQAFQQPNNNSLPFQQPNNNSLAFQQPNNNSLAFQQPNNSIALSNQVNNTSQQQTALPYTADQVNSDTPNQQLPIFGAGQGTPEVEADKNQRYQSTLQFAANLLLQIQQQQQQAPGGHGPGIQQ 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02089 1048 MobiDBLite consensus disorder prediction 412 451 - -
Pste1g02089 1048 MobiDBLite consensus disorder prediction 215 244 - -
Pste1g02089 1048 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Pste1g02089 1048 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 191 IPR000504 GO:0003723
Pste1g02089 1048 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 312 IPR000504 GO:0003723
Pste1g02089 1048 MobiDBLite consensus disorder prediction 725 739 - -
Pste1g02089 1048 FunFam Flowering time control protein FPA 11 93 - -
Pste1g02089 1048 CDD RRM_SF 21 87 - -
Pste1g02089 1048 SUPERFAMILY RNA-binding domain, RBD 7 91 IPR035979 GO:0003676
Pste1g02089 1048 Gene3D - 109 205 IPR012677 -
Pste1g02089 1048 Gene3D - 5 93 IPR012677 -
Pste1g02089 1048 SUPERFAMILY RNA-binding domain, RBD 224 324 IPR035979 GO:0003676
Pste1g02089 1048 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Pste1g02089 1048 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 198 IPR000504 GO:0003723
Pste1g02089 1048 MobiDBLite consensus disorder prediction 988 1011 - -
Pste1g02089 1048 SMART rrm1_1 127 194 IPR000504 GO:0003723
Pste1g02089 1048 SMART rrm1_1 247 315 IPR000504 GO:0003723
Pste1g02089 1048 SMART rrm1_1 20 87 IPR000504 GO:0003723
Pste1g02089 1048 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 319 IPR000504 GO:0003723
Pste1g02089 1048 PANTHER RNA RECOGNITION MOTIF-CONTAINING 17 96 - -
Pste1g02089 1048 FunFam Flowering time control protein FPA isoform A 124 238 - -
Pste1g02089 1048 CDD RRM_SF 128 194 - -
Pste1g02089 1048 Gene3D - 236 322 IPR012677 -
Pste1g02089 1048 SUPERFAMILY RNA-binding domain, RBD 119 214 IPR035979 GO:0003676
Pste1g02089 1048 MobiDBLite consensus disorder prediction 714 751 - -
Pste1g02089 1048 FunFam flowering time control protein FPA 239 332 - -
Pste1g02089 1048 Pfam SPOC domain 537 653 IPR012921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02089 Pste-Chr1 6555417 6569634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02089 2 237 Eukaryotic Initiation Factors Gene Family AT4G34110 24.390 2.97e-12 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03477 3 27381268 27387108 Pste1g02089 1 6555417 6569634 PCT