Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02078 GGTTGTCTTACAAAGTTAGGGCTTAAAGTTAATGTGAAGGGAAGTTTAGGGTGTAGGTGATGATTTATAAGTTGATATAAAGGGAAATATTTGAATGGGAGTGGAAGTGTTCTAGAAAGTACGAGAGGTTATTTTAAATTGGGTTGTCTGAAGTGTGAAAGGGAATGAAATGGGGAGGAACAGTGAGGTGTTGAAGTTAAAGGTGCTGGTTTTGGTTCTTGTAAGTCTTGATTGTTCAGTGGCAGAGATATGGTTGGAGGAAAAGTTCGAAGATGGTTGGAAGAGCCGTTGGGTGGTATCCGATTGGAAAAGGAGTGAGGGAAAAGCAGGTAGCTTCAAGCACACAGCAGGGAAATGGTCTGGGGATCCGGATGATAAAGGTCTTCAGACATATAATGACGCCAAGCATTTTGCCATATCTGCAAAGATACCCGAGTTTAGCAATAAGGACAGAACCCTGGTGGTGCAGTATTCTATTAGGTTTGAGCAGGACATTGAATGCGGTGGCGGTTACATCAAACTTCTCTCTGCTTATGTCAATCAGAAGAAATTTGGTGCTGATACCCCTTATAGTTTGATGTTTGGACCGGATATATGTGGTACACAGACTAAGAAGCTCCATCTTATACTATCATACCAGGGCCAGAATTACCCTATTAGAAAGGATCTGCAATGTGAAACGGATAAGTTGACTCATTTCTATACATTTATTCTAAGGCCTGATGCCTCTTATAGTATCCTTGTTGATAATCGAGAAAGAGATTCTGGAAGTATCTATGCAGATTGGGACATCCTTCCTCCGAGGAAAATCAAGGATGTCAATGCTAAAAAGCCAGCAGACTGGGACGATAGAGAGTACATTCAAGACCCTAATGATGTCAAACCAGAGGGGTATGATTCAATTCCAGCTGAAATTCCTGATCCAAAAGCCAAGAAGCCTGCTCATTGGGATGAGGACTACGATGGACTATGGAAGCCCCCAAAGATTCCCAATCCAACATACAAAGGACCATGGAAACGCAAGAAAATCAAGAACCCCAATTACAAAGGAAAGTGGAAGACTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTTCTCAAACCAATAAAGTATGTGGGCATCGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAACATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAATTGTGGATGAATATATGGCTAATAATAGAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCGGGAAGAAGAGGAGGCACAGAGAGCAAGAGAAGAGGGTGAAAAAAGGAGAAGAGAGAGAGATCATAAATATGGAAATAGAAGGCGTCGTCGAAGGCCGGATCCCCACGATATGGATGATTACCATGACCAATCCAAAGCTGCAATTGCACAGAGCATGCCAAGCTGTACTGAATTG 1468 0.4217 MGRNSEVLKLKVLVLVLVSLDCSVAEIWLEEKFEDGWKSRWVVSDWKRSEGKAGSFKHTAGKWSGDPDDKGLQTYNDAKHFAISAKIPEFSNKDRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGADTPYSLMFGPDICGTQTKKLHLILSYQGQNYPIRKDLQCETDKLTHFYTFILRPDASYSILVDNRERDSGSIYADWDILPPRKIKDVNAKKPADWDDREYIQDPNDVKPEGYDSIPAEIPDPKAKKPAHWDEDYDGLWKPPKIPNPTYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQIVDEYMANNREAEKEAFEEAEKERRAREEEEAQRAREEGEKRRRERDHKYGNRRRRRRPDPHDMDDYHDQSKAAIAQSMPSCTEL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02078 433 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 224 IPR013320 -
Pste1g02078 433 Gene3D - 26 382 - -
Pste1g02078 433 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
Pste1g02078 433 MobiDBLite consensus disorder prediction 360 394 - -
Pste1g02078 433 PRINTS Calreticulin signature 221 234 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pste1g02078 433 PRINTS Calreticulin signature 132 148 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pste1g02078 433 PRINTS Calreticulin signature 249 271 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pste1g02078 433 PRINTS Calreticulin signature 320 340 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pste1g02078 433 PRINTS Calreticulin signature 106 124 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pste1g02078 433 PRINTS Calreticulin signature 287 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pste1g02078 433 MobiDBLite consensus disorder prediction 360 433 - -
Pste1g02078 433 MobiDBLite consensus disorder prediction 226 260 - -
Pste1g02078 433 PIRSF Calreticulin 5 417 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pste1g02078 433 Gene3D Calreticulin/calnexin, P domain 200 320 IPR009033 GO:0005509|GO:0005515
Pste1g02078 433 SUPERFAMILY P-domain of calnexin/calreticulin 207 322 IPR009033 GO:0005509|GO:0005515
Pste1g02078 433 FunFam Calreticulin 211 312 - -
Pste1g02078 433 ProSitePatterns Calreticulin family signature 2. 136 144 IPR018124 GO:0005509
Pste1g02078 433 FunFam Calreticulin 1b 26 208 - -
Pste1g02078 433 Coils Coil 350 395 - -
Pste1g02078 433 PANTHER CALRETICULIN AND CALNEXIN 11 386 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pste1g02078 433 Pfam Calreticulin family 266 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Pste1g02078 433 Pfam Calreticulin family 31 264 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02078 Pste-Chr1 6509591 6516120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02078 3 347 Miscellaneous Gene Families AT5G61790 34.913 9.11e-64 212