Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02059 ATGGAAGAACATTTTTCTCTTAAGGGAAAGGAAAGTGGTTGTTGTACATCTCCTGGGACTCAATTGGAGGAATCTACATCAGTAGATGGTGAAATGAAAAATTCAGCTTCAGAGGACTTGTTTAGCAACTTCACAGAGCTCATGAACTTTGATACCTATGCTGGTTGGAACCATAGCCAATCCATGAGTGATCAGAGTTTGGCTAATGTCTTTTCTTCATTTTCCTCAGCACCATATCAACCACCTGATGGATTGAGTTTAGAGGAACAAACCAATGGTTCATTCTTTATGACAGAAGTTAGTGAAATTCACAATGGTGTGGAAAGTTCTCCTAGTTGCGGGGAGAGAGTTACATTTCAGCAAATGGACATCCAACTTGGGTTCTTAGATGAAGCAAATGATTCAAGTAGCTTAGATTCAAAACAAAAACTTAACGGTACGTCTCAGCGAATTAATACCGCAGACATGGGCAATTACATAATTTCAAGGTCATCAGGTCGGTCACTTGATGATAGAATGTTGAGGGCTTTGTCCTTCTTTATGGAATCAGCTGATGGAGCAATGTTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAGCAACCTTATTTGCTAGATCCGAAGCTTGCAGGGTATCGTGAAGTGTCAAGGGCATTTACATTTTCTGTAGAAGGTAAGAAAAGATCATGTCCGGGGCTTCCTGCTCGCGTGTTTATATCGCATGTTCCTGAATGGACCTCCAATGTTGGTTACTACAATAAAACTGAGTACTTAAGGTTGGAGCATGCAATGAATCATGACATTCGTGGATCAATTGCTCTTCCTGTATCTGATGTGCATTCTCAAGTGCCATGTGCTGTATTGGAACTAGTCACCACAAAGGAAAAGGCTAATTTTGACAGAGAAATAGAAATTGTTTCTCATGCACTCCGGGTAGACTTTTCTTTTGCTATTTCCAGCATATACTTGTTTTATGCCGTTTTCCTGTTTCACTACTTCTTATATGAACTTGTAAATTTAAGGACTAATATGCCCCCACGACTTCTTCCCCAGTGTCTATCAAGTAACAAAAGGGCTGCTTTAACGGAGATAATTGATGTGTTACGCGCTGTGTGTCATGCACATAAATTGCCACTGGCATTAACATGGATTCCCTGTTGCTACAATGAAGGCATAGGAGATGAAAATGAGAGAATACGAATCAAAGAGAGCCATACAAGTTCTAATGAAAAATGTGTACTATGTATTGAGGAATCAGCTTGCTATGTAAATGATGGAGCGGTTGGAGGATTTGTCTATGCATGCGTTGAACATCATCTTGAGGAAGGACAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATATTGATGTGAAGACATATGATATTGGTGAATATCCCCTAGTCCATCATGCACGCAAGTATAACTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACCTATACCAATAATGATGATTACATATTAGAATTTTTTCTGCCTGTCAATATGATAGGGAGTTCAGAACAGCAACTACTATTAGACAATCTCTCAGGTACTATGCGGAGACTTTGTCAGAGTTTGAGGACAGTTTCAGATGCTGAGTTAACAGGAGTAGAAAGCTCCCAAGCTGGGTTTCCAAAGGAAAAAGTCTCAGCTTTTTTTCCTATGTCCAGGAGAAACTCTCAGATAGAATTCATAAATAATAACCATGATTTGGTCCAGAAAATGTCCTTGAAGGCATATAACCTAAGAAATACTGGACTTGAAGCTGCTCAGAGCCAGGCCATGAATGGATCAACAAAGCTGGTTGAGAAAAAGAGAAATACTGTAGAGAAGAATGTTAGCTTAAGCATTCTCCAACAGTACTTTTCCGGTAGTCTGAAAGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGACAACATGGAATTTCAAGATGGCCATCCCGAAAGATTAATAAAGTGAATCGTTCCTTGAAGAAGATACAGACTGTTCTTGACTCTGTCCAGGGAGTGGAAGGAGGGCTGAAGTTTGATCCCTATACTGGGGGGTTTATAGCCGGAGGATCAATCATGAAGGAAATTGAATCACACAAATATATTGTGTTTCCTGAGAAAAGTGCTGTGAAAGACCCTAAGCATGCGACACAAAAATCAGTCTCAGTAGCTCCAGCACCTGGTAGCACGAGTGAGAACTCAGAAATTAAGTTGGATGATGACGGCCTGGTGGGAAACATGCTTGTGCACTCAAGAAGTGTTGTTATCTCTAATACAAATGAGGGAGAATTTAAGAAAGACAATACTTCTTCTGATGATTCAAAATCAATGACCATGAATGATGAATCATGCCAGAAAGCCTGTCTTTGGACCAAGACTCAGGATTGTGCTGAACAAACTTGTTCAATATCCCTGGTTACTAATGAGGTTGAAGTGGGTAGAGAAGGAGTTGATGAACATAACCACCCTACTTCCTCAAGCACTACGAGCTCATCCAATGGCTCTGCCTCAATGATGCACGGCAGCTCATCATGCTCTCAAAGCTTTGAGAACCACAAGCATTCAAAACTCAAGTCAACTTGTGTTGATAGTGGAGCAAAAATGATTGTGAAAGCTAGCTATATGGGAGATACTATTCGTTTCAAGTTTGATCCATCCTCAGGTTGTTTCCAATTATATGAAGAAGTTGCAGCAAGGTTCAAGCTACAAAGTGGGTCATTCCAGCTCAAATATCTGGATGATGAAGAGGAATGGGTAATGTTGGTGAATGACTCGGATTTGCAAGAATGTACAGAAATTTTGGATGACATTGGCACACGTTGTGTGAAGTTTCTTGTCGCTGATGTGCCTAATGTTTTAAGCAGCCGTGGCAGCAACAGTTGCTTCTTGTCAGATAGCTCATATTGTATGATATGA 2973 0.4036 MEEHFSLKGKESGCCTSPGTQLEESTSVDGEMKNSASEDLFSNFTELMNFDTYAGWNHSQSMSDQSLANVFSSFSSAPYQPPDGLSLEEQTNGSFFMTEVSEIHNGVESSPSCGERVTFQQMDIQLGFLDEANDSSSLDSKQKLNGTSQRINTADMGNYIISRSSGRSLDDRMLRALSFFMESADGAMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSVEGKKRSCPGLPARVFISHVPEWTSNVGYYNKTEYLRLEHAMNHDIRGSIALPVSDVHSQVPCAVLELVTTKEKANFDREIEIVSHALRVDFSFAISSIYLFYAVFLFHYFLYELVNLRTNMPPRLLPQCLSSNKRAALTEIIDVLRAVCHAHKLPLALTWIPCCYNEGIGDENERIRIKESHTSSNEKCVLCIEESACYVNDGAVGGFVYACVEHHLEEGQGIAGKALQSNHPFFYIDVKTYDIGEYPLVHHARKYNLNAAVAIRLRSTYTNNDDYILEFFLPVNMIGSSEQQLLLDNLSGTMRRLCQSLRTVSDAELTGVESSQAGFPKEKVSAFFPMSRRNSQIEFINNNHDLVQKMSLKAYNLRNTGLEAAQSQAMNGSTKLVEKKRNTVEKNVSLSILQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSIMKEIESHKYIVFPEKSAVKDPKHATQKSVSVAPAPGSTSENSEIKLDDDGLVGNMLVHSRSVVISNTNEGEFKKDNTSSDDSKSMTMNDESCQKACLWTKTQDCAEQTCSISLVTNEVEVGREGVDEHNHPTSSSTTSSSNGSASMMHGSSSCSQSFENHKHSKLKSTCVDSGAKMIVKASYMGDTIRFKFDPSSGCFQLYEEVAARFKLQSGSFQLKYLDDEEEWVMLVNDSDLQECTEILDDIGTRCVKFLVADVPNVLSSRGSNSCFLSDSSYCMI 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02059 990 Gene3D - 883 965 - -
Pste1g02059 990 SMART PB1_new 886 968 IPR000270 GO:0005515
Pste1g02059 990 Pfam PB1 domain 889 966 IPR000270 GO:0005515
Pste1g02059 990 MobiDBLite consensus disorder prediction 834 868 - -
Pste1g02059 990 ProSiteProfiles RWP-RK domain profile. 609 695 IPR003035 -
Pste1g02059 990 MobiDBLite consensus disorder prediction 13 32 - -
Pste1g02059 990 MobiDBLite consensus disorder prediction 1 32 - -
Pste1g02059 990 PANTHER PROTEIN NLP8 113 977 IPR045012 GO:0003700
Pste1g02059 990 SUPERFAMILY CAD & PB1 domains 883 970 - -
Pste1g02059 990 ProSiteProfiles PB1 domain profile. 886 968 IPR000270 GO:0005515
Pste1g02059 990 MobiDBLite consensus disorder prediction 732 753 - -
Pste1g02059 990 Pfam RWP-RK domain 627 675 IPR003035 -
Pste1g02059 990 MobiDBLite consensus disorder prediction 841 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02059 Pste-Chr1 6461443 6465678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02059 1 982 NLP Transcription Factor Family AT2G43500 46.989 0.0 779
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pste1g02059 PB1 8.1e-17 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03492 3 27506723 27512499 Pste1g02059 1 6461443 6465678 PCT