Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02034 ATGATCCGAAACATAAACGAGTCGGGTCGCCGGATACTAACCTCCCCGGCGGTTCATCCCTGCGAAAGCATCGCCCCCTCTACGCTTATCCCTTCACTCATCACTTTCTCCAACGCCATTTCCACTTTCCAACACAGTTCCTTCCCTTGCAACAAGCGAAACGCGATTCGCTTGACCCTTCTTCTCCAACCTTTCCTTCACGAGATCCGAGACCACCAGTCGGGTCTTCCTGACCCTGCAACACTGAGCCTGTCGGAGCTTCATTTAACCTTCCAGAAGCTTCTTTTCCTTCTTGAAGACCTTGCCCATGAAGGTGCCAAGCTGTACATGTTAATGGAATCGGATCGGGTTGCCACTCAGTTGCGGGTTATATCCAGATCCGTGGCCACTGCTTTCGACGTTTTTCCTTTCGGTTCTGTGGGTATCTCTGAGGAAACTAAAGAGCATGTTTTCTTGCTGAATGAACAAGCGAGGAAGGCTAGGTTTGAATTTGAGGAAGAAGATAAGCGGGTTGTGATGAGTGTTATGTCTGATTTGACCCGGTTTGAGAACCAGGTTGCTCCTGATGAGGGTGATTTGAAGTGGATTCTTGCGTATATTGGGGTTAAAGGGTGGAGTGAGTGTAGCAAAGAGGTGAAGTTTTTGGAGGGTGAAATCGGGTTTGAGTGCCTCAATGAGGAAAAGAGGCAGAAGGTGGGTATTTTAAGTAGTTTGATGGGGTTCATGAGTTATTGTAGATGTGTGGTGATGGAGGTTGTTGATTGTGAAGAAAGTAACAAAAAAATTGATGAAAGAAGAGAGAGTGGTGTTGAAAGTGAGATGAGTATGAGGTTGAGTAGTCTTAACTCAGATGATTTTCGATGTCCAATCTCTTTGGAGTTGATGAGTGATCCTGTGACAATAGAGACAGGTCATACTTATGATCGATCTTCAATTTTGAAGTGGTTCAGAAGTGGGAATTTTATGTGTCCCAAGACGGGTAAAAGGCTTACGACCACTGAGATGGTTCCAAATTTGGTGCTTCGAAGGTTGATTCAGCAATATTGCCTTGCCAATGGCATAAGCATTCCCTTTGTTGATATGGTTCGTAGGAAACGTGACATTAGTAGTATTACTAAGACGGTTGAGCCTGGGAGTGCGGCAGCAGAGGGAGCAATGAGAATGTTGGCTAGTTTTCTGAATGGAATGATTGAGAATCAAAGTGGGGAAGAGAAGAATAGGGCTGCATTTGAGATAAGGCTTCTTTCCAAGACGAGCATTTTTAGTAGGTCTTGTTTGGTGGAAGCTGGTTTGGTTCCTCTTTTGTTGAAGTTGTTGTCATCGAGGGATTCGTTGACTGAAGAAAATGCTGCTGCAGCCCTTTTAAACCTCTCAAAATGTGCAAAGAGTAGAAGTGTAATGGTCGAGAAATGGGTGTTGGAATTGATTGTTGGGATGTTAAAGAAGGGCCTGAAGATTGAAACTCGCCAGCACGCTGCTGCTGTGTTGTTTTACCTTAGTGCTGAGTATGGGAACTTGATAGGTGAAGAGCCAGAAGCAATTCCATCGTTAATAAGACTAGCTAGAGATGGTTCTTATCGTAGCATGAAAAATGGGTTGGTTGCAATTTTTGGCCTTCTGAAGCACCCTGAAAACCATAGGAGGGTGCTTGAAGTTGAAGGTGGAGCAGTTCCTTTGCTAGTTGACATCTTAAAAGGGTGTGAAAAGGAAGACCTTATCACAGACTCGTTGGCAACTCTAGTAACTCTAGCAGAGAGGAGTGAGGGAATGCTTGCAATCCTTCAGGGGGAGGCTTTGCGTTTAGCTGTTGAAATTTTGAGTAGTTCCACTTCAAGGGTGGGGAAGGAGCACTGTGTGGCTTTATTGCTTTCTTTGTCACTAAATGGTGGAGAAGATGTCGTTGCTTATCTAGTGAAGAGCCCTTCTTTAATGGGATCCTTGTATTCCCAACTAAGTGAAGGCACATCTCGAGCAAGCAAGAAAGCCAGTGCTCTAATCAGAATCCTCCATGATTTTTATGATAGGAGGTCCTCTGGCTTCAAGACTTCAGTTATTCCACGAGAACAGTTCATTCACGTTCAGTAA 2085 0.4465 MIRNINESGRRILTSPAVHPCESIAPSTLIPSLITFSNAISTFQHSSFPCNKRNAIRLTLLLQPFLHEIRDHQSGLPDPATLSLSELHLTFQKLLFLLEDLAHEGAKLYMLMESDRVATQLRVISRSVATAFDVFPFGSVGISEETKEHVFLLNEQARKARFEFEEEDKRVVMSVMSDLTRFENQVAPDEGDLKWILAYIGVKGWSECSKEVKFLEGEIGFECLNEEKRQKVGILSSLMGFMSYCRCVVMEVVDCEESNKKIDERRESGVESEMSMRLSSLNSDDFRCPISLELMSDPVTIETGHTYDRSSILKWFRSGNFMCPKTGKRLTTTEMVPNLVLRRLIQQYCLANGISIPFVDMVRRKRDISSITKTVEPGSAAAEGAMRMLASFLNGMIENQSGEEKNRAAFEIRLLSKTSIFSRSCLVEAGLVPLLLKLLSSRDSLTEENAAAALLNLSKCAKSRSVMVEKWVLELIVGMLKKGLKIETRQHAAAVLFYLSAEYGNLIGEEPEAIPSLIRLARDGSYRSMKNGLVAIFGLLKHPENHRRVLEVEGGAVPLLVDILKGCEKEDLITDSLATLVTLAERSEGMLAILQGEALRLAVEILSSSTSRVGKEHCVALLLSLSLNGGEDVVAYLVKSPSLMGSLYSQLSEGTSRASKKASALIRILHDFYDRRSSGFKTSVIPREQFIHVQ 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02034 694 Gene3D - 361 676 IPR011989 -
Pste1g02034 694 SMART arm_5 418 459 IPR000225 GO:0005515
Pste1g02034 694 SMART arm_5 460 501 IPR000225 GO:0005515
Pste1g02034 694 SMART arm_5 544 585 IPR000225 GO:0005515
Pste1g02034 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 356 IPR013083 -
Pste1g02034 694 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Pste1g02034 694 Pfam Armadillo/beta-catenin-like repeat 423 458 IPR000225 GO:0005515
Pste1g02034 694 Pfam U-box domain 284 352 IPR003613 GO:0004842|GO:0016567
Pste1g02034 694 PANTHER U BOX DOMAIN-CONTAINING 60 669 - -
Pste1g02034 694 CDD RING-Ubox_PUB 284 335 IPR045210 -
Pste1g02034 694 SUPERFAMILY ARM repeat 385 669 IPR016024 -
Pste1g02034 694 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Pste1g02034 694 SUPERFAMILY RING/U-box 284 355 - -
Pste1g02034 694 FunFam RING-type E3 ubiquitin transferase 282 354 - -
Pste1g02034 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 458 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02034 Pste-Chr1 6360033 6362117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02034 1 692 U-box Gene Family AT1G60190 44.068 1.44e-180 528
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02034 1 6360033 6362117 Pste1g02034 1 6360033 6362117 ECH